Dra. Blanca Itzelt Taboada Ramirez
Investigador
Bioinformática aplicada a las ciencias ómicas
Diagnóstico molecular y metagenómica viral
Epidemiología y evolución de virus emergentes y reemergentes
Redes neuronales, y aprendizaje profundo, aplicado a la bioinformática
Número de registros: 3
- Activos
- Vencidos
- Vigilancia de influenza en méxico y su posible impacto en sus dinámicas de transmisión, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2023 - 2024
- Analysis of potential recombinant sars-cov-2 variants circulating in mexico, AIDS Healthcare Foundation, 2022 - 2023
- análisis de la composición y dinámica del bacterioma respiratorio infantil en condiciones de salud y enfermedad, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2017 - 2019
Nivel I del SNII
Premio Imaging Solutions of the Year, en el área de Microscopía, Revista Industrial Advanced Imaging, 2008
Premio Image-Pro In Action, Media Cybernetics, 2002
- Activos
- Graduados
1 - Cadenas Castrejon, Elizabeth (2023). Desarrollo de un nuevo método computacional para discriminar taxonómicamente las secuencias de virus generadas por tecnologías de secuenciación masiva de ADN para estudios de metagenómica.
Instituto de Investigación en Ciencias Básicas y Aplicadas,
Doctorado en Ciencias,
UAEM.
*
Asesor: Diaz Gonzalez, Lorena, Taboada Ramirez, Blanca Itzelt
2 - Cruz Flores,Edna (2022). Herramienta computacional para la caracterización de matrices CRISPR.
Facultad de Contaduria, Adminstracion e Informatica,
Maestra en Optimización y Cómputo Aplicado,
UAEM.
*
Asesor: Diaz Gonzalez,Lorena, Taboada-Ramirez,Blanca Itzelt
3 - Aguado Garcia, Yarenci (2020). Caracterizacion de la familia Virgaviridae en el tracto gastrointestinal de ninos menores de un ano de edad .
Instituto de Biotecnologia,
Maestría en Ciencias Bioquímicas,
UNAM.
Asesor: Taboada Ramirez, Blanca Itzelt
4 - Montiel Ruiz, Erika Lizbeth (2020). Desarrollo de una herramienta computacional para la identificación de nuevos genomas virales en estudios metagenómicos.
Facultad de Contaduria, Administracion e Informatica,
Maestria en Optimización y Cómputo Aplicado,
UAEM.
*
Asesor: Diaz Gonzalez, Lorena, Taboada Ramirez, Blanca Itzel
Total de publicaciones: 63
- Tipo
- Fecha
Artículo
5 - Garcia-Lopez,R., Taboada,B., Zarate,S., Munoz-Medina,J.E., Salas-Lais,A.G., Herrera-Estrella,A., Boukadida,C., Vazquez-Perez,J.A., Gomez-Gil,B., Sanchez-Flores,A., Arias,C.F. (2024). Exploration of low-frequency allelic variants of SARS-CoV-2 genomes reveals coinfections in Mexico occurred during periods of VOCs turnover.
Microbial Genomics,
10 (3),
001220.
Artículo
6 - Cadenas-Castrejon,E., Verleyen,J., Boukadida,C., Diaz-Gonzalez,L., Taboada,B. (2023). Evaluation of tools for taxonomic classification of viruses.
Briefings in Functional Genomics,
22 (1),
31-41.
Artículo
7 - Castelan-Sanchez,H.G., Delaye,L., Inward,R.P.D., Dellicour,S., Gutierrez,B., Martinez de la Vina,N., Boukadida,C., Pybus,O.G., de Anda Jauregui,G., Guzman,P., Flores-Garrido,M., Fontanelli,O., Hernandez-Rosales,M., Meneses,A., Olmedo-Alvarez,G., Herrera-Estrella,A., Sanchez-Flores,A., Munoz-Medina,J.E., Comas-Garcia,A., Gomez-Gil,B., Zarate,S., Taboada,B., Lopez,S., Arias,C.F., Kraemer,M.U.G., Lazcano,A., Escalera-Zamudio,M. (2023). Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico.
Elife,
12,
e82069.
Artículo
8 - Garcia-Lopez,R., Rivera-Gutierrez,X., Rosales-Rivera,M., Zarate,S., Munoz-Medina,J.E., Roche,B., Herrera-Estrella,A., Gomez-Gil,B., Sanchez-Flores,A., Taboada,B., Arias,C.F. (2023). SARS-CoV-2 BW lineage, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations.
Infection,
51,
1549-1555.
Artículo
9 - Loza,A., Wong-Chew,R.M., Jimenez-Corona,M.E., Zarate,S., Lopez,S., Ciria,R., Palomares,D., Garcia-Lopez,R., Isa,P., Taboada,B., Rosales,M., Boukadida,C., Herrera-Estrella,A., Mojica,N.S., Rivera-Gutierrez,X., Munoz-Medina,J.E., Salas-Lais,A.G., Sanchez-Flores,A., Vazquez-Perez,J.A., Arias,C.F., Gutierrez-Rios,R.M. (2023). Two-year follow-up of the COVID-19 pandemic in Mexico.
Frontiers in Public Health,
10,
1050673.
Artículo
10 - Perez-Juarez,H., Serrano-Vazquez,A., Godinez-Alvarez,H., Gonzalez,E., Rojas-Velazquez,L., Moran,P., Portillo-Bobadilla,T., Ramiro,M., Hernandez,E., Lau,C., Martinez,M., Padilla,M.L.A., Zaragoza,M.E., Taboada,B., Palomares,L.A., Lopez,S., Alagon,A., Arias,C.F., Ximenez,C. (2023). Longitudinal anti-SARS-CoV-2 antibody immune response in acute and convalescent patients.
Frontiers in Cellular and Infection Microbiology,
13,
1239700.
Artículo
11 - Rivera-Gutierrez,X., Moran,P., Taboada,B., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F. (2023). The fecal and oropharyngeal eukaryotic viromes of healthy infants during the first year of life are personal.
Scientific Reports,
13 (1),
938.
Artículo
12 - Taboada,B.I., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J.E., Gomez-Gil,B., Herrera-Estrella,A., Sanchez-Flores,A., Salas-Lais,A.G., Roche,B., Martinez-Morales,G., Dominguez-Zarate,H., Duque-Molina,C., Aviles-Hernandez,R., Lopez,S., Arias,C.F. (2023). SARS-CoV-2 Omicron variants BA.4 and BA.5 dominated the fifth COVID-19 epidemiological wave in Mexico.
Microbial Genomics,
9 (12),
001120.
Artículo
13 - Zarate,S., Taboada,B., Rosales-Rivera,M., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Gomez-Gil,B., Selem-Mojica N., Salas-Lais,A.G., Vazquez-Perez,J.A., Cabrera-Gaytan,D.A., Fernandes-Matano,L., Uribe-Noguez,L.A., Chale-Dzul,J.B., Maldonado Meza,B.I., Mejia-Nepomuceno,F., Perez-Padilla,R., Gutierrez-Rios,R.M., Loza,A, Roche,B, Lopez,S, Arias,C.F (2023). Omicron-BA.1 Dispersion Rates in Mexico Varied According to the Regional Epidemic Patterns and the Diversity of Local Delta Subvariants.
Viruses,
15 (1),
243.
Artículo
14 - Boukadida,C., Taboada,B., Escalera-Zamudio,M., Isa,P., Ramirez-Gonzalez,J.E., Vazquez-Perez,J.A., Munoz-Medina,J.E., Grajales-Muniz,C., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Rincon-Rubio,A., Matias-Florentino,M., Paz-Juarez,H.E., Sanchez-Flores,A., Mendieta-Condado,E., Barrera-Badillo,G., Hernandez-Rivas,L., Lopez,S., Lopez-Martinez,I, Avila-Rios,S., Arias,C.F. (2022). Genomic Characterization of SARS-CoV-2 Isolated from Patients with Distinct Disease Outcomes in Mexico.
Microbiology Spectrum,
10 (1),
e01249-21.
Artículo
15 - Hernandez-Teran,A., Garciadiego-Fossas,P, Villanueva-Reza,M, Boukadida,C, Taboada,B, Porras,E, Ahumada-Topete,V., Tapia-Diaz,K.E, Matias-Florentino,M., Perez-Garcia,M., Avila-Rios,S., Mejia-Nepomuceno,F, Serna-Munoz,R, Juarez-Hernandez,F., Jimenez-Corona,M.E., Becerril-Vargas,E, Barreto,O, Martinez-Orozco,J.A, Perez-Padilla,R., Arias,C.F, Vazquez-Perez,J.A. (2022). Clinical and Virological Features of Patients Hospitalized with Different Types of COVID-19 Vaccination in Mexico City.
Vaccines (Basel),
10 (8).
Artículo
16 - Isa,P., Taboada,B., Garcia-Lopez,R., Boukadida,C., Ramirez-Gonzalez,J.E., Vazquez-Perez,J.A., Hernandez-Teran,A., Romero-Espinoza,J.A., Munoz-Medina,J.E., Grajales-Muniz,C., Rincon-Rubio,A., Matias-Florentino,M., Sanchez-Flores,A., Mendieta-Condado,E., Barrera-Badillo,G., Lopez,S., Hernandez-Rivas,L., Lopez-Martinez,I., Avila-Rios,S., Arias,C.F. (2022). Metagenomic analysis reveals differences in the co-occurrence and abundance of viral species in SARS-CoV-2 patients with different severity of disease.
BMC Infectious Diseases,
22 (1),
792.
Artículo
17 - Rivera-Gutierrez,X., Moran,P., Taboada,B., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F. (2022). High Prevalence and Diversity of Caliciviruses in a Community Setting Determined by a Metagenomic Approach.
Microbiology Spectrum,
10 (1),
e0185321.
Artículo
18 - Taboada,B., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Boukadida,C., Gomez-Gil,B., Selem-Mojica N., Rosales-Rivera,M., Salas-Lais,A.G., Gutierrez-Rios,R.M., Loza,A., Rivera-Gutierrez,X., Vazquez-Perez,J.A., Avila-Rios,S., Hurtado,J.M., Herrera-Najera,C.I., Nunez-Contreras,J.J., Sarquiz-Martinez,B, Garcia-Arias,V.E., Santiago-Mauricio,M.G., Martinez-Miguel,B., Enciso-Ibarra,J., Chaidez-Quiroz,C., Isa,P., Wong-Chew,R.M., Jimenez-Corona,M.E., Lopez,S., Arias,C.F. (2022). Dominance of Three Sublineages of the SARS-CoV-2 Delta Variant in Mexico.
Viruses,
14 (6),
1165.
Artículo
19 - Zarate,S., Taboada,B., Munoz-Medina,J.E., Isa,P., Sanchez-Flores,A., Boukadida,C., Herrera-Estrella,A., Selem-Mojica N., Rosales-Rivera,M., Gomez-Gil,B., Salas-Lais,A.G., Santacruz-Tinoco,C.E., Montoya-Fuentes,H., ALvarado-Yaah,J.E., Molina-Salinas,G.M., Espinoza-Ayala,G.E., Enciso-Moreno,J.A., Gutierrez-Rios,R.M., Loza,A., Moreno-Contreras,J., Garcia-Lopez,R., Rivera-Gutierrez,X., Comas-Garcia,A., Wong-Chew,R.M., Jimenez-Corona,M.E., del Angel,R.M., Vazquez-Perez,J.A., Matias-Florentino,M., Perez-Garcia,M., Avila-Rios,S., Castelan-Sanchez,H.G., Delaye,L., Martinez-Castilla,L.P., Escalera-Zamudio,M., Lopez,S., Arias,C.F. (2022). The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in Mexico.
Microbiology Spectrum,
10 (2),
e0224021.
Artículo
20 - Garcia-Hernandez,M.E., Trujillo-Ortega,M.E., Alcaraz-Estrada,S.L., Lozano-Aguirre-Beltran,L., Sandoval-Jaime,C., Taboada-Ramirez,B.I., Sarmiento-Silva,R.E. (2021). Molecular Detection and Characterization of Porcine Epidemic Diarrhea Virus and Porcine Aichivirus C Coinfection in Mexico.
Viruses,
13 (5),
738.
Artículo
21 - Rodriguez-Maldonado,A.P., Vazquez-Perez,J.A., Cedro-Tanda,A., Taboada,B., Boukadida,C., Wong-Arambula,C., Nunez-Garcia,T.E., Cruz-Ortiz,N., Barrera-Badillo,G., Hernandez-Rivas L., Lopez-Martinez,I., Mendoza-Vargas,A., Reyes-Grajeda,J.P., Alcaraz,N., Penaloza-Figueroa,F., Gonzalez-Barrera,D., Rangel-DeLeon,D., Herrera-Montalvo,L.A., Mejia-Nepomuceno,F., Hernandez-Teran,A., Mujica-Sanchez,M., Becerril-Vargas,E., Martinez-Orozco,J.A., Perez-Padilla,R., Salas-Hernandez,J., Sanchez-Flores,A., Isa,P., Matias-Florentino,M., Avila-Rios,S., Munoz-Medina,J.E., Grajales-Muniz,C., Salas-Lais,A.G., Santos Coy-Arechavaleta,A., Hidalgo-Miranda,A., Arias,C.F., Ramirez-Gonzalez,J.E. (2021). Emergence and spread of the potential variant of interest (VOI) B.1.1.519 of SARS-CoV-2 predominantly present in Mexico.
Archives of Virology,
166,
3173-3177.
Artículo
22 - Taboada,B., Moran,P., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F. (2021). The gut virome of healthy children during the first year of life is diverse and dynamic.
PLoS ONE,
16 (4),
e0240958.
Artículo
23 - Taboada-Ramirez,B., Zarate,S., Isa,P., Boukadida,C., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramirez-Gonzalez,J.E., Comas-Garcia,A., Grajales-Muniz,C., Rincon-Rubio,A., Matias-Florentino,M., Sanchez-Flores,A., Mendieta-Condado,E., Verleyen,J., Barrera-Badillo,G., Hernandez-Rivas,L., Mejia-Nepomuceno,F., Martinez-Orozco,J.A., Becerril-Vargas,E., Lopez,S., Lopez-Martinez,I., Avila-Rios,S., Arias,C.F. (2021). Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic.
Viruses,
13 (11),
2161.
Artículo
24 - Aguado-Garcia,Y., Taboada,B., Moran,P., Rivera-Gutierrez,X., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F. (2020). Tobamoviruses can be frequently present in the oropharynx and gut of infants during their first year of life.
Scientific Reports,
10 (1),
13595.
Artículo
25 - Lopez-Santaella,T., Alvarez y Munoz,T., Medeiros-Domingo,M., Moreno-Espinosa,S., Consuelo-Sanchez,A., Munoz-Hernandez,O., Sarmiento-Silva,R.E., Sotomayor-Gonzalez,A., Trujillo-Ortega,M.E., Garcia-Hernandez,M.E., Taboada-Ramirez,B.I., Arenas-Huertero,F. (2020). Serological and molecular study of Hepatitis E virus in pediatric patients in Mexico.
Annals of Hepatology,
19 (3),
295-301.
Artículo
26 - Ramirez,D., Vega-Alvarado,L., Taboada,B., Estradas-Romero,A., Soto,L., Juarez,K. (2020). Bacterial diversity in surface sediments from the continental shelf and slope of the North West gulf of Mexico and the presence of hydrocarbon degrading bacteria.
Marine Pollution Bulletin,
150,
110590.
Artículo
27 - Taboada,B., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramos-Cervantes P., Escalera-Zamudio,M., Boukadida,C., Sanchez-Flores,A., Isa,P., Mendieta-Condado E., Martinez-Orozco,J.A., Becerril-Vargas,E., Salas-Hernandez,J., Grande,R., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Vazquez,G., Pulido,F., Araiza-Rodriguez A., Garces-Ayala F., Gonzalez-Bonilla,C.R., Grajales-Muniz C., Borja-Aburto,V, Barrera-Badillo G., Lopez,S., Hernandez-Rivas L., Perez-Padilla,R., Lopez-Martinez,I, Avila-Rios,S., Ruiz-Palacios,G., Ramirez-Gonzalez,J.E., Arias,C.F. (2020). Genomic Analysis of Early SARS-CoV-2 Variants Introduced in Mexico.
Journal of Virology,
94 (18),
e01056-20.
Artículo
28 - Zarate,S., Hernandez-Perez,F., Taboada,B., Martinez,N.E., Alcaraz-Estrada,S.L., Del Moral O., Yocupicio-Monroy,M. (2019). Complete genome of DENV2 isolated from mosquitoes in Mexico.
Infection, Genetics and Evolution,
71,
98-107.
Artículo
29 - Escalera-Zamudio, M., Taboada, B., Rojas-Anaya, E., Lober, U., Loza-Rubio, E., Arias, C.F., Greenwood, A.D. (2018). Viral Communities Among Sympatric Vampire Bats and Cattle.
Ecohealth,
15 (1),
102409,
132-142.
Artículo
30 - Sotomayor-Gonzalez, A., Trujillo-Ortega, M.E., Taboada-Ramirez, B.I., Sandoval-Jaime, C., Sarmiento-Silva, R.E. (2018). Phylogenetic Analysis and Characterization of the Complete Hepatitis E Virus Genome (Zoonotic Genotype 3) in Swine Samples from Mexico.
Viruses,
10 (8),
391.
Artículo
31 - Taboada, B., Estrada, K., Ciria, R., Merino, E. (2018). Operon-mapper: A Web Server for Precise Operon Identification in Bacterial and Archaeal Genomes.
Bioinformatics,
34 (23),
4118?4120.
Artículo
32 - Taboada,B., Isa,P., Gutierrez-Escolano,A.L., del Angel,R.M., Ludert,J.E., Vazquez,N., Tapia-Palacios,M.A., Chavez,P., Garrido,E., Espinosa,A.C., Eguiarte,L.E., Lopez,S., Souza,V., Arias,C.F. (2018). The Geographic Structure of Viruses in the Cuatro Cienegas Basin, a Unique Oasis in Northern Mexico, Reveals a Highly Diverse Population on a Small Geographic Scale.
Applied and Environmental Microbiology,
84 (11),
e00465-18.
Revisión
33 - Zarate, S., Taboada, B., Yocupicio-Monroy, M., Arias, C.F. (2018). The Human Virome.
Archives of Medical Research,
48 (8),
701-716.
Artículo
34 - Zepeda Mendoza, M.L., Xiong, Z., Escalera-Zamudio, M., Runge, A.K., Theze, J., Streicker, D., Frank, H.K., Loza-Rubio, E., Liu, S., Ryder, O.A., Samaniego Castruita, J.A., Katzourakis, A., Pacheco, G., Taboada, B., Lober, U., Pybus, O.G., Li, Y., Rojas-Anaya, E., Bohmann, K., Carmona, Baez A., Arias, C.F., Liu, S., Greenwood, A.D., Bertelsen, M.F., White, N.E., Bunce, M., Zhang, G., Sicheritz-Ponten, T., Gilbert, M.P.T. (2018). Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat.
Nature Ecology & Evolution,
2,
659-668.
Artículo
35 - Escalera-Zamudio,M., Rojas-Anaya,E., Kolokotronis,S.O., Taboada,B., Loza-Rubio,E., Mendez-Ojeda,M.L., Arias,C.F., Osterrieder,N., Greenwood,A.D. (2016). Bats, Primates, and the Evolutionary Origins and Diversification of Mammalian Gammaherpesviruses.
MBio,
7 (6),
e01425-16.
Artículo
36 - Taboada,B.T., Isa,P., Espinoza,M.A., Aponte,F.E., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Wong-Chew,R.M., Firo-Reyes,V., Del Rio-Almendarez,C.N., Gaitan-Meza,J., Villasenor-Sierra,A., Martinez-Aguilar,G., Garcia-Borjas,M., Noyola,D.E., Perez-Gonzalez,L.F., Lopez,S., Santos-Preciado,J.I., Arias,C.F. (2016). Complete Genome Sequence of Human Coronavirus OC43 Isolated from Mexico.
Genome Announcements,
4 (6).
Artículo
37 - Aponte,F.E., Taboada,B., Espinoza,M.A., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Wong-Chew,R.M., Firo-Reyes,V., Del Rio-Almendarez,C.N., Gaitan-Meza,J., Villasenor-Sierra,A., Martinez-Aguilar,G., Garcia-Borjas,M., Noyola,D.E., Perez-Gonzalez,L.F., Lopez,S., Santos-Preciado,J.I., Arias,C.F. (2015). Rhinovirus is an important pathogen in upper and lower respiratory tract infections in Mexican children.
Virology Journal,
12,
31.
Artículo
38 - Escalera-Zamudio,M., Zepeda-Mendoza,M.L., Heeger,F., Loza-Rubio,E., Rojas-Anaya,E., Mendez-Ojeda,M.L., Taboada,B., Mazzoni,C.J., Arias,C.F., Greenwood,A.D. (2015). A novel endogenous betaretrovirus in the common vampire bat (Desmodus rotundus) suggests multiple independent infection and cross-species transmission events.
Journal of Virology,
89 (9),
5180-5184.
Artículo
39 - Wong-Chew,R.M., Espinoza,M.A., Taboada,B., Aponte,F.E., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Santos-Preciado,J.I., Lopez,S., Arias,C.F. (2015). Prevalence of respiratory virus in symptomatic children in private physician office settings in five communities of the state of Veracruz, Mexico.
BMC Research Notes,
8 (1),
261.
Artículo
40 - Taboada,B., Espinoza,M.A., Isa,P., Aponte,F.E., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Wong-Chew,R.M., Firo-Reyes,V., Del Rio-Almendarez,C.N., Gaitan-Meza,J., Villasenor-Sierra,A., Martinez-Aguilar,G., Salas-Mier,M.D., Noyola,D.E., Perez-Gonzalez,L.F., Lopez,S., Santos-Preciado,J.I., Arias,C.F. (2014). Is There Still Room for Novel Viral Pathogens in Pediatric Respiratory Tract Infections?.
PLoS ONE,
9 (11),
e113570.
Artículo
41 - Hidalgo-Millan,A., Taboada,B., Vega-Alvarado,L., Zenit,R., Ascanio,G. (2012). Enhancement of laminar mixing in stirred vessel using geometrical perturbations.
Journal of Applied Research and Technology,
10 (4),
520-533.
Artículo
42 - Taboada,B., Ciria,R., Martinez-Guerrero,C.E., Merino,E. (2012). ProOpDB: Prokaryotic Operon DataBase.
Nucleic Acids Research,
40 (1),
D627-D631.
Artículo
43 - Gama-Castro,S., Salgado,H., Peralta-Gil,M., Santos-Zavaleta,A., Muniz-Rascado,L., Solano-Lira,H., Jimenez-Jacinto,V., Weiss,V., Garcia-Sotelo,J.S., Lopez-Fuentes,A., Porron-Sotelo,L., Alquicira-Hernandez,S., Medina-Rivera,A., Martinez-Flores,I., Alquicira-Hernandez,K., Martinez-Adame,R., Bonavides-Martinez,C., Miranda-Rios,J., Huerta,A.M., Mendoza-Vargas,A., Collado-Torres,L., Taboada,B., Vega-Alvarado,L., Olvera,M., Olvera,L., Grande,R., Morett,E., Collado-Vides,J. (2011). RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units).
Nucleic Acids Research,
39 (Suppl 1),
D98-D105.
Artículo
44 - Vega-Alvarado,L., Taboada,B., Hidalgo-Millan,A., Ascanio,G. (2011). An Image Analysis Method for the Measurement of Mixing Times in Stirred Vessels.
Chemical Engineering & Technology,
34 (6),
859-866.
*
Artículo
45 - Taboada,B., Verde,C., Merino,E. (2010). High accuracy operon prediction method based on STRING database scores.
Nucleic Acids Research,
3812 (E130).
Artículo
46 - Mendoza-Vargas,A., Olvera,L., Olvera,M., Grande,R., Vega-Alvarado,L., Taboada,B., Jimenez-Jacinto,V., Salgado,H., Juarez,K., Contreras-Moreira,B., Huerta,A.M., Collado-Vides,J., Morett,E. (2009). Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli.
PLoS ONE,
4 (10),
e7526.
Artículo
47 - Ascanio,G., Taboada,B., Tanguy,P.A. (2008). Misting droplet size analysis in a metered film coater.
Chemical Engineering Research & Design,
86 (2),
215-218.
*
Artículo
48 - Corkidi,G., Voinson,T., Taboada,B.I., Cordova,M.S., Galindo,E. (2008). Accurate determination of embedded particles within dispersed elements in multiphase dispersions, using a 3D micro-stereoscopic vision system.
Chemical Engineering Science,
63 (2),
317-329.
Artículo
49 - Corkidi,G., Taboada,B., Wood,C.D., Guerrero,A., Darszon,A. (2008). Tracking sperm in three-dimensions.
Biochemical and Biophysical Research Communications,
373 (1),
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Artículo
50 - Corkidi,G., Balderas-Ruiz,K.A., Taboada,B., Serrano-Carreon,L., Galindo,E. (2006). Assessing mango anthracnose using a new three-dimensional image-analysis technique to quantify lesions on fruit.
Plant Pathology,
55 (2),
250-257.
Artículo
51 - Taboada,B., Vega-Alvarado,L., Cordova-Aguilar,M., Galindo,E., Corkidi,G. (2006). Semi-automatic image analysis methodology for the segmentation of bubbles and drops in complex dispersions occurring in bioreactors.
Experiments in Fluids,
41 (3),
383-392.
Artículo
52 - Galindo,E., Larralde-Corona,C.P., Brito,T., Cordova-Aguilar,M.S., Taboada,B., Vega-Alvarado,L., Corkidi,G. (2005). Development of advanced image analysis techniques for the in situ characterization of multiphase dispersions occurring in bioreactors.
Journal of Biotechnology,
116 (3),
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Internacional
53 - Isa, P., Taboada, B., Gutiérrez, A. L., Chávez, P., del Ángel, R. M., Ludert, J. E., Espinosa, A. C., Eguiarte, L. E., Garrido, E., López, S., Souza, V., Arias, C. F. (2018). Hyperdiverse Viral Communities in an Oligotrophic Oasis (Cuatro Ciénegas): Marine Affinities and Microgeographic Differentiation. Cuatro Ciénegas Ecology, Natural History and Microbiology.
Cuatro Ciénegas Basin: An Endangered Hyperdiverse Oasis ,
43-55,
Cham: Springer International Publishing.
Memoria in extenso
54 - Ortuno,S.Y., Hernandez-Aguilar,J.A., Taboada,B., Ochoa-Ortiz,C.A., Ramirez,M.P, Arroyo-Figueroa,G. (2018). The use of artificial intelligence for the intrusion detection system in computer networks. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).
16th Mexican International Conference on Artificial Intelligence, MICAI 2017; Ensenada; Mexico; 23 October 2017 through 28 October 2017; Code 222589,
302-312,
10632 LNAI.
Memoria in extenso
55 - Corkidi,G., Taboada,B., Wood,C.D., Guerrero,A., Darszon,A. (2008). Three-dimensional image acquisition system for multi-sperm tracking. Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on.
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Internacional
56 - Vega-Alvarado,L., Cordova,M.S., Taboada,B., Galindo,E., Corkidi,G. (2004). Online Sauter Diameter Measurement of Air Bubbles and Oil Drops in Stirred Bioreactors by Using Hough Transform. Lecture Notes in Computer Science.
834-840,
3212.
Memoria in extenso
57 - Taboada,B., Poggio,S., Camarena,L., Corkidi,G. (2003). Automatic tracking and analysis system for free-swimming bacteria. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings.
906-909,
1.
Memoria in extenso
58 - Vega-Alvarado,L., Taboada,B., Galindo,E., Corkidi,G. (2003). Hough transform based method for air bubbles and oil drops segmentation in dispersions ocurring in stirred bioreactors. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings.
735-738,
1.
Preprint
59 - Taboada,B., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J., Gomez-Gil,B., Herrera-Estrella,A., Sanchez-Flores,A., Salas-Lais,A.G., Roche,B., Martinez-Morales,G., Dominguez-Zarate,H., Duque-Molina,C., Aviles-Hernandez,R., Lopez,S., Arias,C.F. (2023). SARS-CoV-2 Omicron variants BA.4 and BA.5 dominated the fifth COVID-19 epidemiological wave in Mexico.
Authorea,
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60 - Castelan-Sanchez,H.G., Delaye,L., Inward,R.P.D., Dellicour,S., Gutierrez,B., Martinez de la Vina,N., Pybus,O.G., de Anda Jauregui,G., Guzman,P., Flores-Garrido,M., Fontanelli,O., Hernandez-Rosales,M., Meneses,A., Olmedo-Alvarez,G., Herrera-Estrella,A., Boukadida,C., Sanchez-Flores,A., Munoz-Medina,J.E., Comas-Garcia,A., Gomez-Gil,B., Zarate,S., Taboada,B., Lopez,S., Arias,C.F., Kraemer,M.U.G., Lazcano,A., Escalera-Zamudio,M. (2022). Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico_.
bioRxiv,
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Preprint
61 - Garcia-Lopez,R., Rivera-Gutierrez,X., Rosales-Rivera,M., Taboada,B., Zarate,S., Munoz-Medina,J.E., Roche,B., Herrera-Estrella,A., Gomez-Gil,B., Sanchez-Flores,A., Arias,C.F. (2022). SARS-CoV-2 BW.1, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations.
Research Square,
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62 - Rodriguez-Maldonado,A.P., Vazquez-Perez,J.A., Cedro-Tanda,A., Taboada,B., Boukadida,C., Wong-Arambula,C., Nunez-Garcia,T.E., Cruz-Ortiz,N., Barrera-Badillo,G., Hernandez-Rivas L., Lopez-Martinez,I., Mendoza-Vargas,A., Reyes-Grajeda,J.P., Alcaraz,N., Penaloza-Figueroa,F., Gonzalez-Barrera,D., Rangel-DeLeon,D., Herrera-Montalvo,L.A., Mejia-Nepomuceno,F., Hernandez-Teran,A., Mujica-Sanchez,M., Becerril-Vargas,E., Martinez-Orozco,J.A., Perez-Padilla,R., Salas-Hernandez,J., Sanchez-Flores,A., Isa,P., Matias-Florentino,M., Avila-Rios,S., Munoz-Medina,J.E., Grajales-Muniz,C., Salas-Lais,A.G., Santos Coy-Arechavaleta,A., Hidalgo-Miranda,A., Arias,C.F., Ramirez-Gonzalez,J.E. (2021). Emergence and spread of the potential variant of interest (VOI) B.1.1.519 of SARS-CoV-2 predominantly present in Mexico.
Medarxiv,
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63 - Arias,C.F., Taboada,B., Moran,P., Isa,P., Serrano-Vazquez,A., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C. (2020). The gut virome of healthy children during the first year of life is diverse and dynamic.
bioRxiv,
Preprint posted October 07, 2020,
2020.
Preprint
64 - Taboada,B., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramos-Cervantes,P., Escalera-Zamudio,M., Boukadida,C., Sanchez-Flores,A., Isa,P., Mendieta-Condado,E., Martinez-Orozco,J.A., Becerril-Vargas,E., Salas-Hernandez,J., Grande,R., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Vazquez,G., Pulido,F., Araiza-Rodriguez,A., Garces-Ayala,F., Gonzalez-Bonilla,C.R., Grajales-Muniz,C., Borja-Aburto,V.H, Barrera-Badillo,G, Lopez,S., Hernandez-Rivas,L, Perez-Padilla,R, Lopez Martinez,I, Avila-Rios,S, Ruiz-Palacios,G, Ramirez-Gonzalez,J.E, Arias,C.F. (2020). Genomic analysis of early SARS-CoV-2 strains introduced in Mexico.
bioRxiv,
Preprint posted May 30,
120402.
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65 - Escalera-Zamudio,M., Cobian-Guemes,A.G., Taboada,B., Lopez-Martinez,I., Vazquez-Perez,J.A., Montalvo-Corral,M., Hernandez,J., Diaz-Quinonez,J.A., Barrera-Badillo,G, Lopez,S, Arias,C.F, Isa,P. (2019). Efficient whole genome sequencing of influenza A viruses.
bioRxiv,
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749234.
Nacional
66 - Taboada,B., Larralde,P., Brito,T., Vega-Alvarado,L., Diaz,R., Galindo,E., Corkidi,G. (2003). Images acquisition of multiphase dispersion in fermentation processes.
Journal of Applied Research and Technology,
1 (1),
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67 - Taboada Ramirez, Blanca Itzelt (2012). Identificacionin silicode operonesen genomas bacterianos basadaen redes neuronales .
Doctora en Ciencias (Computacion),
UNAM.
*
Asesor: Merino Perez, Enrique, Verde Rodarte, Maria Cristina
Artículo
68 - Garcia-Lopez,R., Taboada,B., Zarate,S., Munoz-Medina,J.E., Salas-Lais,A.G., Herrera-Estrella,A., Boukadida,C., Vazquez-Perez,J.A., Gomez-Gil,B., Sanchez-Flores,A., Arias,C.F.. Exploration of low-frequency allelic variants of SARS-CoV-2 genomes reveals coinfections in Mexico occurred during periods of VOCs turnover.
Microbial Genomics,
10 (3),
001220.
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69 - Cadenas-Castrejon,E., Verleyen,J., Boukadida,C., Diaz-Gonzalez,L., Taboada,B.. Evaluation of tools for taxonomic classification of viruses.
Briefings in Functional Genomics,
22 (1),
31-41.
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70 - Castelan-Sanchez,H.G., Delaye,L., Inward,R.P.D., Dellicour,S., Gutierrez,B., Martinez de la Vina,N., Boukadida,C., Pybus,O.G., de Anda Jauregui,G., Guzman,P., Flores-Garrido,M., Fontanelli,O., Hernandez-Rosales,M., Meneses,A., Olmedo-Alvarez,G., Herrera-Estrella,A., Sanchez-Flores,A., Munoz-Medina,J.E., Comas-Garcia,A., Gomez-Gil,B., Zarate,S., Taboada,B., Lopez,S., Arias,C.F., Kraemer,M.U.G., Lazcano,A., Escalera-Zamudio,M.. Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico.
Elife,
12,
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71 - Garcia-Lopez,R., Rivera-Gutierrez,X., Rosales-Rivera,M., Zarate,S., Munoz-Medina,J.E., Roche,B., Herrera-Estrella,A., Gomez-Gil,B., Sanchez-Flores,A., Taboada,B., Arias,C.F.. SARS-CoV-2 BW lineage, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations.
Infection,
51,
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72 - Loza,A., Wong-Chew,R.M., Jimenez-Corona,M.E., Zarate,S., Lopez,S., Ciria,R., Palomares,D., Garcia-Lopez,R., Isa,P., Taboada,B., Rosales,M., Boukadida,C., Herrera-Estrella,A., Mojica,N.S., Rivera-Gutierrez,X., Munoz-Medina,J.E., Salas-Lais,A.G., Sanchez-Flores,A., Vazquez-Perez,J.A., Arias,C.F., Gutierrez-Rios,R.M.. Two-year follow-up of the COVID-19 pandemic in Mexico.
Frontiers in Public Health,
10,
1050673.
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73 - Perez-Juarez,H., Serrano-Vazquez,A., Godinez-Alvarez,H., Gonzalez,E., Rojas-Velazquez,L., Moran,P., Portillo-Bobadilla,T., Ramiro,M., Hernandez,E., Lau,C., Martinez,M., Padilla,M.L.A., Zaragoza,M.E., Taboada,B., Palomares,L.A., Lopez,S., Alagon,A., Arias,C.F., Ximenez,C.. Longitudinal anti-SARS-CoV-2 antibody immune response in acute and convalescent patients.
Frontiers in Cellular and Infection Microbiology,
13,
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74 - Rivera-Gutierrez,X., Moran,P., Taboada,B., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F.. The fecal and oropharyngeal eukaryotic viromes of healthy infants during the first year of life are personal.
Scientific Reports,
13 (1),
938.
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75 - Taboada,B.I., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J.E., Gomez-Gil,B., Herrera-Estrella,A., Sanchez-Flores,A., Salas-Lais,A.G., Roche,B., Martinez-Morales,G., Dominguez-Zarate,H., Duque-Molina,C., Aviles-Hernandez,R., Lopez,S., Arias,C.F.. SARS-CoV-2 Omicron variants BA.4 and BA.5 dominated the fifth COVID-19 epidemiological wave in Mexico.
Microbial Genomics,
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76 - Zarate,S., Taboada,B., Rosales-Rivera,M., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Gomez-Gil,B., Selem-Mojica N., Salas-Lais,A.G., Vazquez-Perez,J.A., Cabrera-Gaytan,D.A., Fernandes-Matano,L., Uribe-Noguez,L.A., Chale-Dzul,J.B., Maldonado Meza,B.I., Mejia-Nepomuceno,F., Perez-Padilla,R., Gutierrez-Rios,R.M., Loza,A, Roche,B, Lopez,S, Arias,C.F. Omicron-BA.1 Dispersion Rates in Mexico Varied According to the Regional Epidemic Patterns and the Diversity of Local Delta Subvariants.
Viruses,
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77 - Taboada,B., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J., Gomez-Gil,B., Herrera-Estrella,A., Sanchez-Flores,A., Salas-Lais,A.G., Roche,B., Martinez-Morales,G., Dominguez-Zarate,H., Duque-Molina,C., Aviles-Hernandez,R., Lopez,S., Arias,C.F.. SARS-CoV-2 Omicron variants BA.4 and BA.5 dominated the fifth COVID-19 epidemiological wave in Mexico.
Authorea,
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78 - Boukadida,C., Taboada,B., Escalera-Zamudio,M., Isa,P., Ramirez-Gonzalez,J.E., Vazquez-Perez,J.A., Munoz-Medina,J.E., Grajales-Muniz,C., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Rincon-Rubio,A., Matias-Florentino,M., Paz-Juarez,H.E., Sanchez-Flores,A., Mendieta-Condado,E., Barrera-Badillo,G., Hernandez-Rivas,L., Lopez,S., Lopez-Martinez,I, Avila-Rios,S., Arias,C.F.. Genomic Characterization of SARS-CoV-2 Isolated from Patients with Distinct Disease Outcomes in Mexico.
Microbiology Spectrum,
10 (1),
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79 - Hernandez-Teran,A., Garciadiego-Fossas,P, Villanueva-Reza,M, Boukadida,C, Taboada,B, Porras,E, Ahumada-Topete,V., Tapia-Diaz,K.E, Matias-Florentino,M., Perez-Garcia,M., Avila-Rios,S., Mejia-Nepomuceno,F, Serna-Munoz,R, Juarez-Hernandez,F., Jimenez-Corona,M.E., Becerril-Vargas,E, Barreto,O, Martinez-Orozco,J.A, Perez-Padilla,R., Arias,C.F, Vazquez-Perez,J.A.. Clinical and Virological Features of Patients Hospitalized with Different Types of COVID-19 Vaccination in Mexico City.
Vaccines (Basel),
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80 - Isa,P., Taboada,B., Garcia-Lopez,R., Boukadida,C., Ramirez-Gonzalez,J.E., Vazquez-Perez,J.A., Hernandez-Teran,A., Romero-Espinoza,J.A., Munoz-Medina,J.E., Grajales-Muniz,C., Rincon-Rubio,A., Matias-Florentino,M., Sanchez-Flores,A., Mendieta-Condado,E., Barrera-Badillo,G., Lopez,S., Hernandez-Rivas,L., Lopez-Martinez,I., Avila-Rios,S., Arias,C.F.. Metagenomic analysis reveals differences in the co-occurrence and abundance of viral species in SARS-CoV-2 patients with different severity of disease.
BMC Infectious Diseases,
22 (1),
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81 - Rivera-Gutierrez,X., Moran,P., Taboada,B., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F.. High Prevalence and Diversity of Caliciviruses in a Community Setting Determined by a Metagenomic Approach.
Microbiology Spectrum,
10 (1),
e0185321.
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82 - Taboada,B., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Boukadida,C., Gomez-Gil,B., Selem-Mojica N., Rosales-Rivera,M., Salas-Lais,A.G., Gutierrez-Rios,R.M., Loza,A., Rivera-Gutierrez,X., Vazquez-Perez,J.A., Avila-Rios,S., Hurtado,J.M., Herrera-Najera,C.I., Nunez-Contreras,J.J., Sarquiz-Martinez,B, Garcia-Arias,V.E., Santiago-Mauricio,M.G., Martinez-Miguel,B., Enciso-Ibarra,J., Chaidez-Quiroz,C., Isa,P., Wong-Chew,R.M., Jimenez-Corona,M.E., Lopez,S., Arias,C.F.. Dominance of Three Sublineages of the SARS-CoV-2 Delta Variant in Mexico.
Viruses,
14 (6),
1165.
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83 - Zarate,S., Taboada,B., Munoz-Medina,J.E., Isa,P., Sanchez-Flores,A., Boukadida,C., Herrera-Estrella,A., Selem-Mojica N., Rosales-Rivera,M., Gomez-Gil,B., Salas-Lais,A.G., Santacruz-Tinoco,C.E., Montoya-Fuentes,H., ALvarado-Yaah,J.E., Molina-Salinas,G.M., Espinoza-Ayala,G.E., Enciso-Moreno,J.A., Gutierrez-Rios,R.M., Loza,A., Moreno-Contreras,J., Garcia-Lopez,R., Rivera-Gutierrez,X., Comas-Garcia,A., Wong-Chew,R.M., Jimenez-Corona,M.E., del Angel,R.M., Vazquez-Perez,J.A., Matias-Florentino,M., Perez-Garcia,M., Avila-Rios,S., Castelan-Sanchez,H.G., Delaye,L., Martinez-Castilla,L.P., Escalera-Zamudio,M., Lopez,S., Arias,C.F.. The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in Mexico.
Microbiology Spectrum,
10 (2),
e0224021.
Preprint
84 - Castelan-Sanchez,H.G., Delaye,L., Inward,R.P.D., Dellicour,S., Gutierrez,B., Martinez de la Vina,N., Pybus,O.G., de Anda Jauregui,G., Guzman,P., Flores-Garrido,M., Fontanelli,O., Hernandez-Rosales,M., Meneses,A., Olmedo-Alvarez,G., Herrera-Estrella,A., Boukadida,C., Sanchez-Flores,A., Munoz-Medina,J.E., Comas-Garcia,A., Gomez-Gil,B., Zarate,S., Taboada,B., Lopez,S., Arias,C.F., Kraemer,M.U.G., Lazcano,A., Escalera-Zamudio,M.. Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico_.
bioRxiv,
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Preprint
85 - Garcia-Lopez,R., Rivera-Gutierrez,X., Rosales-Rivera,M., Taboada,B., Zarate,S., Munoz-Medina,J.E., Roche,B., Herrera-Estrella,A., Gomez-Gil,B., Sanchez-Flores,A., Arias,C.F.. SARS-CoV-2 BW.1, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations.
Research Square,
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86 - Garcia-Hernandez,M.E., Trujillo-Ortega,M.E., Alcaraz-Estrada,S.L., Lozano-Aguirre-Beltran,L., Sandoval-Jaime,C., Taboada-Ramirez,B.I., Sarmiento-Silva,R.E.. Molecular Detection and Characterization of Porcine Epidemic Diarrhea Virus and Porcine Aichivirus C Coinfection in Mexico.
Viruses,
13 (5),
738.
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87 - Rodriguez-Maldonado,A.P., Vazquez-Perez,J.A., Cedro-Tanda,A., Taboada,B., Boukadida,C., Wong-Arambula,C., Nunez-Garcia,T.E., Cruz-Ortiz,N., Barrera-Badillo,G., Hernandez-Rivas L., Lopez-Martinez,I., Mendoza-Vargas,A., Reyes-Grajeda,J.P., Alcaraz,N., Penaloza-Figueroa,F., Gonzalez-Barrera,D., Rangel-DeLeon,D., Herrera-Montalvo,L.A., Mejia-Nepomuceno,F., Hernandez-Teran,A., Mujica-Sanchez,M., Becerril-Vargas,E., Martinez-Orozco,J.A., Perez-Padilla,R., Salas-Hernandez,J., Sanchez-Flores,A., Isa,P., Matias-Florentino,M., Avila-Rios,S., Munoz-Medina,J.E., Grajales-Muniz,C., Salas-Lais,A.G., Santos Coy-Arechavaleta,A., Hidalgo-Miranda,A., Arias,C.F., Ramirez-Gonzalez,J.E.. Emergence and spread of the potential variant of interest (VOI) B.1.1.519 of SARS-CoV-2 predominantly present in Mexico.
Archives of Virology,
166,
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88 - Taboada,B., Moran,P., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F.. The gut virome of healthy children during the first year of life is diverse and dynamic.
PLoS ONE,
16 (4),
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89 - Taboada-Ramirez,B., Zarate,S., Isa,P., Boukadida,C., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramirez-Gonzalez,J.E., Comas-Garcia,A., Grajales-Muniz,C., Rincon-Rubio,A., Matias-Florentino,M., Sanchez-Flores,A., Mendieta-Condado,E., Verleyen,J., Barrera-Badillo,G., Hernandez-Rivas,L., Mejia-Nepomuceno,F., Martinez-Orozco,J.A., Becerril-Vargas,E., Lopez,S., Lopez-Martinez,I., Avila-Rios,S., Arias,C.F.. Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic.
Viruses,
13 (11),
2161.
preprint
90 - Rodriguez-Maldonado,A.P., Vazquez-Perez,J.A., Cedro-Tanda,A., Taboada,B., Boukadida,C., Wong-Arambula,C., Nunez-Garcia,T.E., Cruz-Ortiz,N., Barrera-Badillo,G., Hernandez-Rivas L., Lopez-Martinez,I., Mendoza-Vargas,A., Reyes-Grajeda,J.P., Alcaraz,N., Penaloza-Figueroa,F., Gonzalez-Barrera,D., Rangel-DeLeon,D., Herrera-Montalvo,L.A., Mejia-Nepomuceno,F., Hernandez-Teran,A., Mujica-Sanchez,M., Becerril-Vargas,E., Martinez-Orozco,J.A., Perez-Padilla,R., Salas-Hernandez,J., Sanchez-Flores,A., Isa,P., Matias-Florentino,M., Avila-Rios,S., Munoz-Medina,J.E., Grajales-Muniz,C., Salas-Lais,A.G., Santos Coy-Arechavaleta,A., Hidalgo-Miranda,A., Arias,C.F., Ramirez-Gonzalez,J.E.. Emergence and spread of the potential variant of interest (VOI) B.1.1.519 of SARS-CoV-2 predominantly present in Mexico.
Medarxiv,
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91 - Aguado-Garcia,Y., Taboada,B., Moran,P., Rivera-Gutierrez,X., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F.. Tobamoviruses can be frequently present in the oropharynx and gut of infants during their first year of life.
Scientific Reports,
10 (1),
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92 - Lopez-Santaella,T., Alvarez y Munoz,T., Medeiros-Domingo,M., Moreno-Espinosa,S., Consuelo-Sanchez,A., Munoz-Hernandez,O., Sarmiento-Silva,R.E., Sotomayor-Gonzalez,A., Trujillo-Ortega,M.E., Garcia-Hernandez,M.E., Taboada-Ramirez,B.I., Arenas-Huertero,F.. Serological and molecular study of Hepatitis E virus in pediatric patients in Mexico.
Annals of Hepatology,
19 (3),
295-301.
Artículo
93 - Ramirez,D., Vega-Alvarado,L., Taboada,B., Estradas-Romero,A., Soto,L., Juarez,K.. Bacterial diversity in surface sediments from the continental shelf and slope of the North West gulf of Mexico and the presence of hydrocarbon degrading bacteria.
Marine Pollution Bulletin,
150,
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94 - Taboada,B., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramos-Cervantes P., Escalera-Zamudio,M., Boukadida,C., Sanchez-Flores,A., Isa,P., Mendieta-Condado E., Martinez-Orozco,J.A., Becerril-Vargas,E., Salas-Hernandez,J., Grande,R., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Vazquez,G., Pulido,F., Araiza-Rodriguez A., Garces-Ayala F., Gonzalez-Bonilla,C.R., Grajales-Muniz C., Borja-Aburto,V, Barrera-Badillo G., Lopez,S., Hernandez-Rivas L., Perez-Padilla,R., Lopez-Martinez,I, Avila-Rios,S., Ruiz-Palacios,G., Ramirez-Gonzalez,J.E., Arias,C.F.. Genomic Analysis of Early SARS-CoV-2 Variants Introduced in Mexico.
Journal of Virology,
94 (18),
e01056-20.
Preprint
95 - Arias,C.F., Taboada,B., Moran,P., Isa,P., Serrano-Vazquez,A., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C.. The gut virome of healthy children during the first year of life is diverse and dynamic.
bioRxiv,
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2020.
Preprint
96 - Taboada,B., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramos-Cervantes,P., Escalera-Zamudio,M., Boukadida,C., Sanchez-Flores,A., Isa,P., Mendieta-Condado,E., Martinez-Orozco,J.A., Becerril-Vargas,E., Salas-Hernandez,J., Grande,R., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Vazquez,G., Pulido,F., Araiza-Rodriguez,A., Garces-Ayala,F., Gonzalez-Bonilla,C.R., Grajales-Muniz,C., Borja-Aburto,V.H, Barrera-Badillo,G, Lopez,S., Hernandez-Rivas,L, Perez-Padilla,R, Lopez Martinez,I, Avila-Rios,S, Ruiz-Palacios,G, Ramirez-Gonzalez,J.E, Arias,C.F.. Genomic analysis of early SARS-CoV-2 strains introduced in Mexico.
bioRxiv,
Preprint posted May 30,
120402.
Artículo
97 - Zarate,S., Hernandez-Perez,F., Taboada,B., Martinez,N.E., Alcaraz-Estrada,S.L., Del Moral O., Yocupicio-Monroy,M.. Complete genome of DENV2 isolated from mosquitoes in Mexico.
Infection, Genetics and Evolution,
71,
98-107.
Preprint
98 - Escalera-Zamudio,M., Cobian-Guemes,A.G., Taboada,B., Lopez-Martinez,I., Vazquez-Perez,J.A., Montalvo-Corral,M., Hernandez,J., Diaz-Quinonez,J.A., Barrera-Badillo,G, Lopez,S, Arias,C.F, Isa,P.. Efficient whole genome sequencing of influenza A viruses.
bioRxiv,
Preprint posted August 29, 2019,
749234.
Artículo
99 - Escalera-Zamudio, M., Taboada, B., Rojas-Anaya, E., Lober, U., Loza-Rubio, E., Arias, C.F., Greenwood, A.D.. Viral Communities Among Sympatric Vampire Bats and Cattle.
Ecohealth,
15 (1),
102409,
132-142.
Artículo
100 - Sotomayor-Gonzalez, A., Trujillo-Ortega, M.E., Taboada-Ramirez, B.I., Sandoval-Jaime, C., Sarmiento-Silva, R.E.. Phylogenetic Analysis and Characterization of the Complete Hepatitis E Virus Genome (Zoonotic Genotype 3) in Swine Samples from Mexico.
Viruses,
10 (8),
391.
Artículo
101 - Taboada, B., Estrada, K., Ciria, R., Merino, E.. Operon-mapper: A Web Server for Precise Operon Identification in Bacterial and Archaeal Genomes.
Bioinformatics,
34 (23),
4118?4120.
Artículo
102 - Taboada,B., Isa,P., Gutierrez-Escolano,A.L., del Angel,R.M., Ludert,J.E., Vazquez,N., Tapia-Palacios,M.A., Chavez,P., Garrido,E., Espinosa,A.C., Eguiarte,L.E., Lopez,S., Souza,V., Arias,C.F.. The Geographic Structure of Viruses in the Cuatro Cienegas Basin, a Unique Oasis in Northern Mexico, Reveals a Highly Diverse Population on a Small Geographic Scale.
Applied and Environmental Microbiology,
84 (11),
e00465-18.
Revisión
103 - Zarate, S., Taboada, B., Yocupicio-Monroy, M., Arias, C.F.. The Human Virome.
Archives of Medical Research,
48 (8),
701-716.
Artículo
104 - Zepeda Mendoza, M.L., Xiong, Z., Escalera-Zamudio, M., Runge, A.K., Theze, J., Streicker, D., Frank, H.K., Loza-Rubio, E., Liu, S., Ryder, O.A., Samaniego Castruita, J.A., Katzourakis, A., Pacheco, G., Taboada, B., Lober, U., Pybus, O.G., Li, Y., Rojas-Anaya, E., Bohmann, K., Carmona, Baez A., Arias, C.F., Liu, S., Greenwood, A.D., Bertelsen, M.F., White, N.E., Bunce, M., Zhang, G., Sicheritz-Ponten, T., Gilbert, M.P.T.. Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat.
Nature Ecology & Evolution,
2,
659-668.
Internacional
105 - Isa, P., Taboada, B., Gutiérrez, A. L., Chávez, P., del Ángel, R. M., Ludert, J. E., Espinosa, A. C., Eguiarte, L. E., Garrido, E., López, S., Souza, V., Arias, C. F.. Hyperdiverse Viral Communities in an Oligotrophic Oasis (Cuatro Ciénegas): Marine Affinities and Microgeographic Differentiation. Cuatro Ciénegas Ecology, Natural History and Microbiology.
Cuatro Ciénegas Basin: An Endangered Hyperdiverse Oasis ,
43-55,
Cham: Springer International Publishing.
Memoria in extenso
106 - Ortuno,S.Y., Hernandez-Aguilar,J.A., Taboada,B., Ochoa-Ortiz,C.A., Ramirez,M.P, Arroyo-Figueroa,G.. The use of artificial intelligence for the intrusion detection system in computer networks. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).
16th Mexican International Conference on Artificial Intelligence, MICAI 2017; Ensenada; Mexico; 23 October 2017 through 28 October 2017; Code 222589,
302-312,
10632 LNAI.
Artículo
107 - Escalera-Zamudio,M., Rojas-Anaya,E., Kolokotronis,S.O., Taboada,B., Loza-Rubio,E., Mendez-Ojeda,M.L., Arias,C.F., Osterrieder,N., Greenwood,A.D.. Bats, Primates, and the Evolutionary Origins and Diversification of Mammalian Gammaherpesviruses.
MBio,
7 (6),
e01425-16.
Artículo
108 - Taboada,B.T., Isa,P., Espinoza,M.A., Aponte,F.E., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Wong-Chew,R.M., Firo-Reyes,V., Del Rio-Almendarez,C.N., Gaitan-Meza,J., Villasenor-Sierra,A., Martinez-Aguilar,G., Garcia-Borjas,M., Noyola,D.E., Perez-Gonzalez,L.F., Lopez,S., Santos-Preciado,J.I., Arias,C.F.. Complete Genome Sequence of Human Coronavirus OC43 Isolated from Mexico.
Genome Announcements,
4 (6).
Artículo
109 - Aponte,F.E., Taboada,B., Espinoza,M.A., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Wong-Chew,R.M., Firo-Reyes,V., Del Rio-Almendarez,C.N., Gaitan-Meza,J., Villasenor-Sierra,A., Martinez-Aguilar,G., Garcia-Borjas,M., Noyola,D.E., Perez-Gonzalez,L.F., Lopez,S., Santos-Preciado,J.I., Arias,C.F.. Rhinovirus is an important pathogen in upper and lower respiratory tract infections in Mexican children.
Virology Journal,
12,
31.
Artículo
110 - Escalera-Zamudio,M., Zepeda-Mendoza,M.L., Heeger,F., Loza-Rubio,E., Rojas-Anaya,E., Mendez-Ojeda,M.L., Taboada,B., Mazzoni,C.J., Arias,C.F., Greenwood,A.D.. A novel endogenous betaretrovirus in the common vampire bat (Desmodus rotundus) suggests multiple independent infection and cross-species transmission events.
Journal of Virology,
89 (9),
5180-5184.
Artículo
111 - Wong-Chew,R.M., Espinoza,M.A., Taboada,B., Aponte,F.E., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Santos-Preciado,J.I., Lopez,S., Arias,C.F.. Prevalence of respiratory virus in symptomatic children in private physician office settings in five communities of the state of Veracruz, Mexico.
BMC Research Notes,
8 (1),
261.
Artículo
112 - Taboada,B., Espinoza,M.A., Isa,P., Aponte,F.E., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Wong-Chew,R.M., Firo-Reyes,V., Del Rio-Almendarez,C.N., Gaitan-Meza,J., Villasenor-Sierra,A., Martinez-Aguilar,G., Salas-Mier,M.D., Noyola,D.E., Perez-Gonzalez,L.F., Lopez,S., Santos-Preciado,J.I., Arias,C.F.. Is There Still Room for Novel Viral Pathogens in Pediatric Respiratory Tract Infections?.
PLoS ONE,
9 (11),
e113570.
Artículo
113 - Hidalgo-Millan,A., Taboada,B., Vega-Alvarado,L., Zenit,R., Ascanio,G.. Enhancement of laminar mixing in stirred vessel using geometrical perturbations.
Journal of Applied Research and Technology,
10 (4),
520-533.
Artículo
114 - Taboada,B., Ciria,R., Martinez-Guerrero,C.E., Merino,E.. ProOpDB: Prokaryotic Operon DataBase.
Nucleic Acids Research,
40 (1),
D627-D631.
115 - Taboada Ramirez, Blanca Itzelt. Identificacionin silicode operonesen genomas bacterianos basadaen redes neuronales .
Doctora en Ciencias (Computacion),
UNAM.
*
Asesor: Merino Perez, Enrique, Verde Rodarte, Maria Cristina
Artículo
116 - Gama-Castro,S., Salgado,H., Peralta-Gil,M., Santos-Zavaleta,A., Muniz-Rascado,L., Solano-Lira,H., Jimenez-Jacinto,V., Weiss,V., Garcia-Sotelo,J.S., Lopez-Fuentes,A., Porron-Sotelo,L., Alquicira-Hernandez,S., Medina-Rivera,A., Martinez-Flores,I., Alquicira-Hernandez,K., Martinez-Adame,R., Bonavides-Martinez,C., Miranda-Rios,J., Huerta,A.M., Mendoza-Vargas,A., Collado-Torres,L., Taboada,B., Vega-Alvarado,L., Olvera,M., Olvera,L., Grande,R., Morett,E., Collado-Vides,J.. RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units).
Nucleic Acids Research,
39 (Suppl 1),
D98-D105.
Artículo
117 - Vega-Alvarado,L., Taboada,B., Hidalgo-Millan,A., Ascanio,G.. An Image Analysis Method for the Measurement of Mixing Times in Stirred Vessels.
Chemical Engineering & Technology,
34 (6),
859-866.
*
Artículo
118 - Taboada,B., Verde,C., Merino,E.. High accuracy operon prediction method based on STRING database scores.
Nucleic Acids Research,
3812 (E130).
Artículo
119 - Mendoza-Vargas,A., Olvera,L., Olvera,M., Grande,R., Vega-Alvarado,L., Taboada,B., Jimenez-Jacinto,V., Salgado,H., Juarez,K., Contreras-Moreira,B., Huerta,A.M., Collado-Vides,J., Morett,E.. Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli.
PLoS ONE,
4 (10),
e7526.
Artículo
120 - Ascanio,G., Taboada,B., Tanguy,P.A.. Misting droplet size analysis in a metered film coater.
Chemical Engineering Research & Design,
86 (2),
215-218.
*
Artículo
121 - Corkidi,G., Voinson,T., Taboada,B.I., Cordova,M.S., Galindo,E.. Accurate determination of embedded particles within dispersed elements in multiphase dispersions, using a 3D micro-stereoscopic vision system.
Chemical Engineering Science,
63 (2),
317-329.
Artículo
122 - Corkidi,G., Taboada,B., Wood,C.D., Guerrero,A., Darszon,A.. Tracking sperm in three-dimensions.
Biochemical and Biophysical Research Communications,
373 (1),
125-129.
Memoria in extenso
123 - Corkidi,G., Taboada,B., Wood,C.D., Guerrero,A., Darszon,A.. Three-dimensional image acquisition system for multi-sperm tracking. Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on.
145-148.
Artículo
124 - Corkidi,G., Balderas-Ruiz,K.A., Taboada,B., Serrano-Carreon,L., Galindo,E.. Assessing mango anthracnose using a new three-dimensional image-analysis technique to quantify lesions on fruit.
Plant Pathology,
55 (2),
250-257.
Artículo
125 - Taboada,B., Vega-Alvarado,L., Cordova-Aguilar,M., Galindo,E., Corkidi,G.. Semi-automatic image analysis methodology for the segmentation of bubbles and drops in complex dispersions occurring in bioreactors.
Experiments in Fluids,
41 (3),
383-392.
Artículo
126 - Galindo,E., Larralde-Corona,C.P., Brito,T., Cordova-Aguilar,M.S., Taboada,B., Vega-Alvarado,L., Corkidi,G.. Development of advanced image analysis techniques for the in situ characterization of multiphase dispersions occurring in bioreactors.
Journal of Biotechnology,
116 (3),
261-270.
Internacional
127 - Vega-Alvarado,L., Cordova,M.S., Taboada,B., Galindo,E., Corkidi,G.. Online Sauter Diameter Measurement of Air Bubbles and Oil Drops in Stirred Bioreactors by Using Hough Transform. Lecture Notes in Computer Science.
834-840,
3212.
Memoria in extenso
128 - Taboada,B., Poggio,S., Camarena,L., Corkidi,G.. Automatic tracking and analysis system for free-swimming bacteria. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings.
906-909,
1.
Memoria in extenso
129 - Vega-Alvarado,L., Taboada,B., Galindo,E., Corkidi,G.. Hough transform based method for air bubbles and oil drops segmentation in dispersions ocurring in stirred bioreactors. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings.
735-738,
1.
Nacional
130 - Taboada,B., Larralde,P., Brito,T., Vega-Alvarado,L., Diaz,R., Galindo,E., Corkidi,G.. Images acquisition of multiphase dispersion in fermentation processes.
Journal of Applied Research and Technology,
1 (1),
78-84.