Dra. Blanca Itzelt Taboada Ramirez
Investigadora Titular B Tiempo Completo
Bioinformática aplicada a las ciencias ómicas
Diagnóstico molecular y metagenómica viral
Epidemiología y evolución de virus emergentes y reemergentes
Redes neuronales, y aprendizaje profundo, aplicado a la bioinformática
Número de registros: 3
- Activos
- Vencidos
- Vigilancia de influenza en méxico y su posible impacto en sus dinámicas de transmisión, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2023 - 2024
- Analysis of potential recombinant sars-cov-2 variants circulating in mexico, AIDS Healthcare Foundation, 2022 - 2023
- análisis de la composición y dinámica del bacterioma respiratorio infantil en condiciones de salud y enfermedad, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2017 - 2019
Nivel II del SNII
Premio Imaging Solutions of the Year, en el área de Microscopía, Revista Industrial Advanced Imaging, 2008
Premio Image-Pro In Action, Media Cybernetics, 2002
- Activos
- Graduados
1 - Bahena Sanches, Roberto (2024). Caracterización del viroma procarionte en muestras de heces de niños sanos en el primer año de vida.
Instituto de Biotecnologia,
Maestría en Ciencias Bioquímicas,
UNAM.
Asesor: Taboada Ramírez, Blanca Itzelt
2 - Cadenas Castrejon, Elizabeth (2023). Desarrollo de un nuevo método computacional para discriminar taxonómicamente las secuencias de virus generadas por tecnologías de secuenciación masiva de ADN para estudios de metagenómica.
Instituto de Investigación en Ciencias Básicas y Aplicadas,
Doctorado en Ciencias,
UAEM.
*
Asesor: Diaz Gonzalez, Lorena, Taboada Ramirez, Blanca Itzelt
3 - Cruz Flores,Edna (2022). Herramienta computacional para la caracterización de matrices CRISPR.
Facultad de Contaduria, Adminstracion e Informatica,
Maestra en Optimización y Cómputo Aplicado,
UAEM.
*
Asesor: Diaz Gonzalez,Lorena, Taboada-Ramirez,Blanca Itzelt
4 - Aguado Garcia, Yarenci (2020). Caracterizacion de la familia Virgaviridae en el tracto gastrointestinal de ninos menores de un ano de edad .
Instituto de Biotecnologia,
Maestría en Ciencias Bioquímicas,
UNAM.
Asesor: Taboada Ramirez, Blanca Itzelt
5 - Montiel Ruiz, Erika Lizbeth (2020). Desarrollo de una herramienta computacional para la identificación de nuevos genomas virales en estudios metagenómicos.
Facultad de Contaduria, Administracion e Informatica,
Maestria en Optimización y Cómputo Aplicado,
UAEM.
*
Asesor: Diaz Gonzalez, Lorena, Taboada Ramirez, Blanca Itzel
Total de publicaciones: 65
- Tipo
- Fecha
Artículo
6 - Zarate,A., Diaz-Gonzalez,L., Taboada,B. (2025). VirDetect-AI: a residual and convolutional neural network-based metagenomic tool for eukaryotic viral protein identification.
Briefings in Bioinformatics,
26 (1),
bbaf001.
Artículo
7 - Garcia-Lopez,R., Taboada,B., Zarate,S., Munoz-Medina,J.E., Salas-Lais,A.G., Herrera-Estrella,A., Boukadida,C., Vazquez-Perez,J.A., Gomez-Gil,B., Sanchez-Flores,A., Arias,C.F. (2024). Exploration of low-frequency allelic variants of SARS-CoV-2 genomes reveals coinfections in Mexico occurred during periods of VOCs turnover.
Microbial Genomics,
10 (3),
001220.
Artículo
8 - Cadenas-Castrejon,E., Verleyen,J., Boukadida,C., Diaz-Gonzalez,L., Taboada,B. (2023). Evaluation of tools for taxonomic classification of viruses.
Briefings in Functional Genomics,
22 (1),
31-41.
Artículo
9 - Castelan-Sanchez,H.G., Delaye,L., Inward,R.P.D., Dellicour,S., Gutierrez,B., Martinez de la Vina,N., Boukadida,C., Pybus,O.G., de Anda Jauregui,G., Guzman,P., Flores-Garrido,M., Fontanelli,O., Hernandez-Rosales,M., Meneses,A., Olmedo-Alvarez,G., Herrera-Estrella,A., Sanchez-Flores,A., Munoz-Medina,J.E., Comas-Garcia,A., Gomez-Gil,B., Zarate,S., Taboada,B., Lopez,S., Arias,C.F., Kraemer,M.U.G., Lazcano,A., Escalera-Zamudio,M. (2023). Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico.
Elife,
12,
e82069.
Artículo
10 - Garcia-Lopez,R., Rivera-Gutierrez,X., Rosales-Rivera,M., Zarate,S., Munoz-Medina,J.E., Roche,B., Herrera-Estrella,A., Gomez-Gil,B., Sanchez-Flores,A., Taboada,B., Arias,C.F. (2023). SARS-CoV-2 BW lineage, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations.
Infection,
51,
1549-1555.
Artículo
11 - Loza,A., Wong-Chew,R.M., Jimenez-Corona,M.E., Zarate,S., Lopez,S., Ciria,R., Palomares,D., Garcia-Lopez,R., Isa,P., Taboada,B., Rosales,M., Boukadida,C., Herrera-Estrella,A., Mojica,N.S., Rivera-Gutierrez,X., Munoz-Medina,J.E., Salas-Lais,A.G., Sanchez-Flores,A., Vazquez-Perez,J.A., Arias,C.F., Gutierrez-Rios,R.M. (2023). Two-year follow-up of the COVID-19 pandemic in Mexico.
Frontiers in Public Health,
10,
1050673.
Artículo
12 - Perez-Juarez,H., Serrano-Vazquez,A., Godinez-Alvarez,H., Gonzalez,E., Rojas-Velazquez,L., Moran,P., Portillo-Bobadilla,T., Ramiro,M., Hernandez,E., Lau,C., Martinez,M., Padilla,M.L.A., Zaragoza,M.E., Taboada,B., Palomares,L.A., Lopez,S., Alagon,A., Arias,C.F., Ximenez,C. (2023). Longitudinal anti-SARS-CoV-2 antibody immune response in acute and convalescent patients.
Frontiers in Cellular and Infection Microbiology,
13,
1239700.
Artículo
13 - Rivera-Gutierrez,X., Moran,P., Taboada,B., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F. (2023). The fecal and oropharyngeal eukaryotic viromes of healthy infants during the first year of life are personal.
Scientific Reports,
13 (1),
938.
Artículo
14 - Taboada,B.I., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J.E., Gomez-Gil,B., Herrera-Estrella,A., Sanchez-Flores,A., Salas-Lais,A.G., Roche,B., Martinez-Morales,G., Dominguez-Zarate,H., Duque-Molina,C., Aviles-Hernandez,R., Lopez,S., Arias,C.F. (2023). SARS-CoV-2 Omicron variants BA.4 and BA.5 dominated the fifth COVID-19 epidemiological wave in Mexico.
Microbial Genomics,
9 (12),
001120.
Artículo
15 - Zarate,S., Taboada,B., Rosales-Rivera,M., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Gomez-Gil,B., Selem-Mojica N., Salas-Lais,A.G., Vazquez-Perez,J.A., Cabrera-Gaytan,D.A., Fernandes-Matano,L., Uribe-Noguez,L.A., Chale-Dzul,J.B., Maldonado Meza,B.I., Mejia-Nepomuceno,F., Perez-Padilla,R., Gutierrez-Rios,R.M., Loza,A, Roche,B, Lopez,S, Arias,C.F (2023). Omicron-BA.1 Dispersion Rates in Mexico Varied According to the Regional Epidemic Patterns and the Diversity of Local Delta Subvariants.
Viruses,
15 (1),
243.
Artículo
16 - Boukadida,C., Taboada,B., Escalera-Zamudio,M., Isa,P., Ramirez-Gonzalez,J.E., Vazquez-Perez,J.A., Munoz-Medina,J.E., Grajales-Muniz,C., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Rincon-Rubio,A., Matias-Florentino,M., Paz-Juarez,H.E., Sanchez-Flores,A., Mendieta-Condado,E., Barrera-Badillo,G., Hernandez-Rivas,L., Lopez,S., Lopez-Martinez,I, Avila-Rios,S., Arias,C.F. (2022). Genomic Characterization of SARS-CoV-2 Isolated from Patients with Distinct Disease Outcomes in Mexico.
Microbiology Spectrum,
10 (1),
e01249-21.
Artículo
17 - Hernandez-Teran,A., Garciadiego-Fossas,P, Villanueva-Reza,M, Boukadida,C, Taboada,B, Porras,E, Ahumada-Topete,V., Tapia-Diaz,K.E, Matias-Florentino,M., Perez-Garcia,M., Avila-Rios,S., Mejia-Nepomuceno,F, Serna-Munoz,R, Juarez-Hernandez,F., Jimenez-Corona,M.E., Becerril-Vargas,E, Barreto,O, Martinez-Orozco,J.A, Perez-Padilla,R., Arias,C.F, Vazquez-Perez,J.A. (2022). Clinical and Virological Features of Patients Hospitalized with Different Types of COVID-19 Vaccination in Mexico City.
Vaccines (Basel),
10 (8).
Artículo
18 - Isa,P., Taboada,B., Garcia-Lopez,R., Boukadida,C., Ramirez-Gonzalez,J.E., Vazquez-Perez,J.A., Hernandez-Teran,A., Romero-Espinoza,J.A., Munoz-Medina,J.E., Grajales-Muniz,C., Rincon-Rubio,A., Matias-Florentino,M., Sanchez-Flores,A., Mendieta-Condado,E., Barrera-Badillo,G., Lopez,S., Hernandez-Rivas,L., Lopez-Martinez,I., Avila-Rios,S., Arias,C.F. (2022). Metagenomic analysis reveals differences in the co-occurrence and abundance of viral species in SARS-CoV-2 patients with different severity of disease.
BMC Infectious Diseases,
22 (1),
792.
Artículo
19 - Rivera-Gutierrez,X., Moran,P., Taboada,B., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F. (2022). High Prevalence and Diversity of Caliciviruses in a Community Setting Determined by a Metagenomic Approach.
Microbiology Spectrum,
10 (1),
e0185321.
Artículo
20 - Taboada,B., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Boukadida,C., Gomez-Gil,B., Selem-Mojica N., Rosales-Rivera,M., Salas-Lais,A.G., Gutierrez-Rios,R.M., Loza,A., Rivera-Gutierrez,X., Vazquez-Perez,J.A., Avila-Rios,S., Hurtado,J.M., Herrera-Najera,C.I., Nunez-Contreras,J.J., Sarquiz-Martinez,B, Garcia-Arias,V.E., Santiago-Mauricio,M.G., Martinez-Miguel,B., Enciso-Ibarra,J., Chaidez-Quiroz,C., Isa,P., Wong-Chew,R.M., Jimenez-Corona,M.E., Lopez,S., Arias,C.F. (2022). Dominance of Three Sublineages of the SARS-CoV-2 Delta Variant in Mexico.
Viruses,
14 (6),
1165.
Artículo
21 - Zarate,S., Taboada,B., Munoz-Medina,J.E., Isa,P., Sanchez-Flores,A., Boukadida,C., Herrera-Estrella,A., Selem-Mojica N., Rosales-Rivera,M., Gomez-Gil,B., Salas-Lais,A.G., Santacruz-Tinoco,C.E., Montoya-Fuentes,H., ALvarado-Yaah,J.E., Molina-Salinas,G.M., Espinoza-Ayala,G.E., Enciso-Moreno,J.A., Gutierrez-Rios,R.M., Loza,A., Moreno-Contreras,J., Garcia-Lopez,R., Rivera-Gutierrez,X., Comas-Garcia,A., Wong-Chew,R.M., Jimenez-Corona,M.E., del Angel,R.M., Vazquez-Perez,J.A., Matias-Florentino,M., Perez-Garcia,M., Avila-Rios,S., Castelan-Sanchez,H.G., Delaye,L., Martinez-Castilla,L.P., Escalera-Zamudio,M., Lopez,S., Arias,C.F. (2022). The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in Mexico.
Microbiology Spectrum,
10 (2),
e0224021.
Artículo
22 - Garcia-Hernandez,M.E., Trujillo-Ortega,M.E., Alcaraz-Estrada,S.L., Lozano-Aguirre-Beltran,L., Sandoval-Jaime,C., Taboada-Ramirez,B.I., Sarmiento-Silva,R.E. (2021). Molecular Detection and Characterization of Porcine Epidemic Diarrhea Virus and Porcine Aichivirus C Coinfection in Mexico.
Viruses,
13 (5),
738.
Artículo
23 - Rodriguez-Maldonado,A.P., Vazquez-Perez,J.A., Cedro-Tanda,A., Taboada,B., Boukadida,C., Wong-Arambula,C., Nunez-Garcia,T.E., Cruz-Ortiz,N., Barrera-Badillo,G., Hernandez-Rivas L., Lopez-Martinez,I., Mendoza-Vargas,A., Reyes-Grajeda,J.P., Alcaraz,N., Penaloza-Figueroa,F., Gonzalez-Barrera,D., Rangel-DeLeon,D., Herrera-Montalvo,L.A., Mejia-Nepomuceno,F., Hernandez-Teran,A., Mujica-Sanchez,M., Becerril-Vargas,E., Martinez-Orozco,J.A., Perez-Padilla,R., Salas-Hernandez,J., Sanchez-Flores,A., Isa,P., Matias-Florentino,M., Avila-Rios,S., Munoz-Medina,J.E., Grajales-Muniz,C., Salas-Lais,A.G., Santos Coy-Arechavaleta,A., Hidalgo-Miranda,A., Arias,C.F., Ramirez-Gonzalez,J.E. (2021). Emergence and spread of the potential variant of interest (VOI) B.1.1.519 of SARS-CoV-2 predominantly present in Mexico.
Archives of Virology,
166,
3173-3177.
Artículo
24 - Taboada,B., Moran,P., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F. (2021). The gut virome of healthy children during the first year of life is diverse and dynamic.
PLoS ONE,
16 (4),
e0240958.
Artículo
25 - Taboada-Ramirez,B., Zarate,S., Isa,P., Boukadida,C., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramirez-Gonzalez,J.E., Comas-Garcia,A., Grajales-Muniz,C., Rincon-Rubio,A., Matias-Florentino,M., Sanchez-Flores,A., Mendieta-Condado,E., Verleyen,J., Barrera-Badillo,G., Hernandez-Rivas,L., Mejia-Nepomuceno,F., Martinez-Orozco,J.A., Becerril-Vargas,E., Lopez,S., Lopez-Martinez,I., Avila-Rios,S., Arias,C.F. (2021). Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic.
Viruses,
13 (11),
2161.
Artículo
26 - Aguado-Garcia,Y., Taboada,B., Moran,P., Rivera-Gutierrez,X., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F. (2020). Tobamoviruses can be frequently present in the oropharynx and gut of infants during their first year of life.
Scientific Reports,
10 (1),
13595.
Artículo
27 - Lopez-Santaella,T., Alvarez y Munoz,T., Medeiros-Domingo,M., Moreno-Espinosa,S., Consuelo-Sanchez,A., Munoz-Hernandez,O., Sarmiento-Silva,R.E., Sotomayor-Gonzalez,A., Trujillo-Ortega,M.E., Garcia-Hernandez,M.E., Taboada-Ramirez,B.I., Arenas-Huertero,F. (2020). Serological and molecular study of Hepatitis E virus in pediatric patients in Mexico.
Annals of Hepatology,
19 (3),
295-301.
Artículo
28 - Ramirez,D., Vega-Alvarado,L., Taboada,B., Estradas-Romero,A., Soto,L., Juarez,K. (2020). Bacterial diversity in surface sediments from the continental shelf and slope of the North West gulf of Mexico and the presence of hydrocarbon degrading bacteria.
Marine Pollution Bulletin,
150,
110590.
Artículo
29 - Taboada,B., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramos-Cervantes P., Escalera-Zamudio,M., Boukadida,C., Sanchez-Flores,A., Isa,P., Mendieta-Condado E., Martinez-Orozco,J.A., Becerril-Vargas,E., Salas-Hernandez,J., Grande,R., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Vazquez,G., Pulido,F., Araiza-Rodriguez A., Garces-Ayala F., Gonzalez-Bonilla,C.R., Grajales-Muniz C., Borja-Aburto,V, Barrera-Badillo G., Lopez,S., Hernandez-Rivas L., Perez-Padilla,R., Lopez-Martinez,I, Avila-Rios,S., Ruiz-Palacios,G., Ramirez-Gonzalez,J.E., Arias,C.F. (2020). Genomic Analysis of Early SARS-CoV-2 Variants Introduced in Mexico.
Journal of Virology,
94 (18),
e01056-20.
Artículo
30 - Zarate,S., Hernandez-Perez,F., Taboada,B., Martinez,N.E., Alcaraz-Estrada,S.L., Del Moral O., Yocupicio-Monroy,M. (2019). Complete genome of DENV2 isolated from mosquitoes in Mexico.
Infection, Genetics and Evolution,
71,
98-107.
Artículo
31 - Escalera-Zamudio, M., Taboada, B., Rojas-Anaya, E., Lober, U., Loza-Rubio, E., Arias, C.F., Greenwood, A.D. (2018). Viral Communities Among Sympatric Vampire Bats and Cattle.
Ecohealth,
15 (1),
102409,
132-142.
Artículo
32 - Sotomayor-Gonzalez, A., Trujillo-Ortega, M.E., Taboada-Ramirez, B.I., Sandoval-Jaime, C., Sarmiento-Silva, R.E. (2018). Phylogenetic Analysis and Characterization of the Complete Hepatitis E Virus Genome (Zoonotic Genotype 3) in Swine Samples from Mexico.
Viruses,
10 (8),
391.
Artículo
33 - Taboada, B., Estrada, K., Ciria, R., Merino, E. (2018). Operon-mapper: A Web Server for Precise Operon Identification in Bacterial and Archaeal Genomes.
Bioinformatics,
34 (23),
4118?4120.
Artículo
34 - Taboada,B., Isa,P., Gutierrez-Escolano,A.L., del Angel,R.M., Ludert,J.E., Vazquez,N., Tapia-Palacios,M.A., Chavez,P., Garrido,E., Espinosa,A.C., Eguiarte,L.E., Lopez,S., Souza,V., Arias,C.F. (2018). The Geographic Structure of Viruses in the Cuatro Cienegas Basin, a Unique Oasis in Northern Mexico, Reveals a Highly Diverse Population on a Small Geographic Scale.
Applied and Environmental Microbiology,
84 (11),
e00465-18.
Revisión
35 - Zarate, S., Taboada, B., Yocupicio-Monroy, M., Arias, C.F. (2018). The Human Virome.
Archives of Medical Research,
48 (8),
701-716.
Artículo
36 - Zepeda Mendoza, M.L., Xiong, Z., Escalera-Zamudio, M., Runge, A.K., Theze, J., Streicker, D., Frank, H.K., Loza-Rubio, E., Liu, S., Ryder, O.A., Samaniego Castruita, J.A., Katzourakis, A., Pacheco, G., Taboada, B., Lober, U., Pybus, O.G., Li, Y., Rojas-Anaya, E., Bohmann, K., Carmona, Baez A., Arias, C.F., Liu, S., Greenwood, A.D., Bertelsen, M.F., White, N.E., Bunce, M., Zhang, G., Sicheritz-Ponten, T., Gilbert, M.P.T. (2018). Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat.
Nature Ecology & Evolution,
2,
659-668.
Artículo
37 - Escalera-Zamudio,M., Rojas-Anaya,E., Kolokotronis,S.O., Taboada,B., Loza-Rubio,E., Mendez-Ojeda,M.L., Arias,C.F., Osterrieder,N., Greenwood,A.D. (2016). Bats, Primates, and the Evolutionary Origins and Diversification of Mammalian Gammaherpesviruses.
MBio,
7 (6),
e01425-16.
Artículo
38 - Taboada,B.T., Isa,P., Espinoza,M.A., Aponte,F.E., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Wong-Chew,R.M., Firo-Reyes,V., Del Rio-Almendarez,C.N., Gaitan-Meza,J., Villasenor-Sierra,A., Martinez-Aguilar,G., Garcia-Borjas,M., Noyola,D.E., Perez-Gonzalez,L.F., Lopez,S., Santos-Preciado,J.I., Arias,C.F. (2016). Complete Genome Sequence of Human Coronavirus OC43 Isolated from Mexico.
Genome Announcements,
4 (6).
Artículo
39 - Aponte,F.E., Taboada,B., Espinoza,M.A., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Wong-Chew,R.M., Firo-Reyes,V., Del Rio-Almendarez,C.N., Gaitan-Meza,J., Villasenor-Sierra,A., Martinez-Aguilar,G., Garcia-Borjas,M., Noyola,D.E., Perez-Gonzalez,L.F., Lopez,S., Santos-Preciado,J.I., Arias,C.F. (2015). Rhinovirus is an important pathogen in upper and lower respiratory tract infections in Mexican children.
Virology Journal,
12,
31.
Artículo
40 - Escalera-Zamudio,M., Zepeda-Mendoza,M.L., Heeger,F., Loza-Rubio,E., Rojas-Anaya,E., Mendez-Ojeda,M.L., Taboada,B., Mazzoni,C.J., Arias,C.F., Greenwood,A.D. (2015). A novel endogenous betaretrovirus in the common vampire bat (Desmodus rotundus) suggests multiple independent infection and cross-species transmission events.
Journal of Virology,
89 (9),
5180-5184.
Artículo
41 - Wong-Chew,R.M., Espinoza,M.A., Taboada,B., Aponte,F.E., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Santos-Preciado,J.I., Lopez,S., Arias,C.F. (2015). Prevalence of respiratory virus in symptomatic children in private physician office settings in five communities of the state of Veracruz, Mexico.
BMC Research Notes,
8 (1),
261.
Artículo
42 - Taboada,B., Espinoza,M.A., Isa,P., Aponte,F.E., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Wong-Chew,R.M., Firo-Reyes,V., Del Rio-Almendarez,C.N., Gaitan-Meza,J., Villasenor-Sierra,A., Martinez-Aguilar,G., Salas-Mier,M.D., Noyola,D.E., Perez-Gonzalez,L.F., Lopez,S., Santos-Preciado,J.I., Arias,C.F. (2014). Is There Still Room for Novel Viral Pathogens in Pediatric Respiratory Tract Infections?.
PLoS ONE,
9 (11),
e113570.
Artículo
43 - Hidalgo-Millan,A., Taboada,B., Vega-Alvarado,L., Zenit,R., Ascanio,G. (2012). Enhancement of laminar mixing in stirred vessel using geometrical perturbations.
Journal of Applied Research and Technology,
10 (4),
520-533.
Artículo
44 - Taboada,B., Ciria,R., Martinez-Guerrero,C.E., Merino,E. (2012). ProOpDB: Prokaryotic Operon DataBase.
Nucleic Acids Research,
40 (1),
D627-D631.
Artículo
45 - Gama-Castro,S., Salgado,H., Peralta-Gil,M., Santos-Zavaleta,A., Muniz-Rascado,L., Solano-Lira,H., Jimenez-Jacinto,V., Weiss,V., Garcia-Sotelo,J.S., Lopez-Fuentes,A., Porron-Sotelo,L., Alquicira-Hernandez,S., Medina-Rivera,A., Martinez-Flores,I., Alquicira-Hernandez,K., Martinez-Adame,R., Bonavides-Martinez,C., Miranda-Rios,J., Huerta,A.M., Mendoza-Vargas,A., Collado-Torres,L., Taboada,B., Vega-Alvarado,L., Olvera,M., Olvera,L., Grande,R., Morett,E., Collado-Vides,J. (2011). RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units).
Nucleic Acids Research,
39 (Suppl 1),
D98-D105.
Artículo
46 - Vega-Alvarado,L., Taboada,B., Hidalgo-Millan,A., Ascanio,G. (2011). An Image Analysis Method for the Measurement of Mixing Times in Stirred Vessels.
Chemical Engineering & Technology,
34 (6),
859-866.
*
Artículo
47 - Taboada,B., Verde,C., Merino,E. (2010). High accuracy operon prediction method based on STRING database scores.
Nucleic Acids Research,
3812 (E130).
Artículo
48 - Mendoza-Vargas,A., Olvera,L., Olvera,M., Grande,R., Vega-Alvarado,L., Taboada,B., Jimenez-Jacinto,V., Salgado,H., Juarez,K., Contreras-Moreira,B., Huerta,A.M., Collado-Vides,J., Morett,E. (2009). Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli.
PLoS ONE,
4 (10),
e7526.
Artículo
49 - Ascanio,G., Taboada,B., Tanguy,P.A. (2008). Misting droplet size analysis in a metered film coater.
Chemical Engineering Research & Design,
86 (2),
215-218.
*
Artículo
50 - Corkidi,G., Voinson,T., Taboada,B.I., Cordova,M.S., Galindo,E. (2008). Accurate determination of embedded particles within dispersed elements in multiphase dispersions, using a 3D micro-stereoscopic vision system.
Chemical Engineering Science,
63 (2),
317-329.
Artículo
51 - Corkidi,G., Taboada,B., Wood,C.D., Guerrero,A., Darszon,A. (2008). Tracking sperm in three-dimensions.
Biochemical and Biophysical Research Communications,
373 (1),
125-129.
Artículo
52 - Corkidi,G., Balderas-Ruiz,K.A., Taboada,B., Serrano-Carreon,L., Galindo,E. (2006). Assessing mango anthracnose using a new three-dimensional image-analysis technique to quantify lesions on fruit.
Plant Pathology,
55 (2),
250-257.
Artículo
53 - Taboada,B., Vega-Alvarado,L., Cordova-Aguilar,M., Galindo,E., Corkidi,G. (2006). Semi-automatic image analysis methodology for the segmentation of bubbles and drops in complex dispersions occurring in bioreactors.
Experiments in Fluids,
41 (3),
383-392.
Artículo
54 - Galindo,E., Larralde-Corona,C.P., Brito,T., Cordova-Aguilar,M.S., Taboada,B., Vega-Alvarado,L., Corkidi,G. (2005). Development of advanced image analysis techniques for the in situ characterization of multiphase dispersions occurring in bioreactors.
Journal of Biotechnology,
116 (3),
261-270.
Internacional
55 - Isa, P., Taboada, B., Gutiérrez, A. L., Chávez, P., del Ángel, R. M., Ludert, J. E., Espinosa, A. C., Eguiarte, L. E., Garrido, E., López, S., Souza, V., Arias, C. F. (2018). Hyperdiverse Viral Communities in an Oligotrophic Oasis (Cuatro Ciénegas): Marine Affinities and Microgeographic Differentiation. Cuatro Ciénegas Ecology, Natural History and Microbiology.
Cuatro Ciénegas Basin: An Endangered Hyperdiverse Oasis ,
43-55,
Cham: Springer International Publishing.
Memoria in extenso
56 - Ortuno,S.Y., Hernandez-Aguilar,J.A., Taboada,B., Ochoa-Ortiz,C.A., Ramirez,M.P, Arroyo-Figueroa,G. (2018). The use of artificial intelligence for the intrusion detection system in computer networks. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).
16th Mexican International Conference on Artificial Intelligence, MICAI 2017; Ensenada; Mexico; 23 October 2017 through 28 October 2017; Code 222589,
302-312,
10632 LNAI.
Memoria in extenso
57 - Corkidi,G., Taboada,B., Wood,C.D., Guerrero,A., Darszon,A. (2008). Three-dimensional image acquisition system for multi-sperm tracking. Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on.
145-148.
Internacional
58 - Vega-Alvarado,L., Cordova,M.S., Taboada,B., Galindo,E., Corkidi,G. (2004). Online Sauter Diameter Measurement of Air Bubbles and Oil Drops in Stirred Bioreactors by Using Hough Transform. Lecture Notes in Computer Science.
834-840,
3212.
Memoria in extenso
59 - Taboada,B., Poggio,S., Camarena,L., Corkidi,G. (2003). Automatic tracking and analysis system for free-swimming bacteria. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings.
906-909,
1.
Memoria in extenso
60 - Vega-Alvarado,L., Taboada,B., Galindo,E., Corkidi,G. (2003). Hough transform based method for air bubbles and oil drops segmentation in dispersions ocurring in stirred bioreactors. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings.
735-738,
1.
Nacional divulgación
61 - Taboada-Ramirez,B.I., Zarate-Guerra,C.S. (2025). El papel de la bioinformática en la lucha contra los virus.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
10 (40).
Preprint
62 - Taboada,B., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J., Gomez-Gil,B., Herrera-Estrella,A., Sanchez-Flores,A., Salas-Lais,A.G., Roche,B., Martinez-Morales,G., Dominguez-Zarate,H., Duque-Molina,C., Aviles-Hernandez,R., Lopez,S., Arias,C.F. (2023). SARS-CoV-2 Omicron variants BA.4 and BA.5 dominated the fifth COVID-19 epidemiological wave in Mexico.
Authorea,
Preprint.
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63 - Castelan-Sanchez,H.G., Delaye,L., Inward,R.P.D., Dellicour,S., Gutierrez,B., Martinez de la Vina,N., Pybus,O.G., de Anda Jauregui,G., Guzman,P., Flores-Garrido,M., Fontanelli,O., Hernandez-Rosales,M., Meneses,A., Olmedo-Alvarez,G., Herrera-Estrella,A., Boukadida,C., Sanchez-Flores,A., Munoz-Medina,J.E., Comas-Garcia,A., Gomez-Gil,B., Zarate,S., Taboada,B., Lopez,S., Arias,C.F., Kraemer,M.U.G., Lazcano,A., Escalera-Zamudio,M. (2022). Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico_.
bioRxiv,
Preprint posted August 10.
Preprint
64 - Garcia-Lopez,R., Rivera-Gutierrez,X., Rosales-Rivera,M., Taboada,B., Zarate,S., Munoz-Medina,J.E., Roche,B., Herrera-Estrella,A., Gomez-Gil,B., Sanchez-Flores,A., Arias,C.F. (2022). SARS-CoV-2 BW.1, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations.
Research Square,
Preprint 21 Nov.
preprint
65 - Rodriguez-Maldonado,A.P., Vazquez-Perez,J.A., Cedro-Tanda,A., Taboada,B., Boukadida,C., Wong-Arambula,C., Nunez-Garcia,T.E., Cruz-Ortiz,N., Barrera-Badillo,G., Hernandez-Rivas L., Lopez-Martinez,I., Mendoza-Vargas,A., Reyes-Grajeda,J.P., Alcaraz,N., Penaloza-Figueroa,F., Gonzalez-Barrera,D., Rangel-DeLeon,D., Herrera-Montalvo,L.A., Mejia-Nepomuceno,F., Hernandez-Teran,A., Mujica-Sanchez,M., Becerril-Vargas,E., Martinez-Orozco,J.A., Perez-Padilla,R., Salas-Hernandez,J., Sanchez-Flores,A., Isa,P., Matias-Florentino,M., Avila-Rios,S., Munoz-Medina,J.E., Grajales-Muniz,C., Salas-Lais,A.G., Santos Coy-Arechavaleta,A., Hidalgo-Miranda,A., Arias,C.F., Ramirez-Gonzalez,J.E. (2021). Emergence and spread of the potential variant of interest (VOI) B.1.1.519 of SARS-CoV-2 predominantly present in Mexico.
Medarxiv,
Preprint posted Posted May 20.
Preprint
66 - Arias,C.F., Taboada,B., Moran,P., Isa,P., Serrano-Vazquez,A., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C. (2020). The gut virome of healthy children during the first year of life is diverse and dynamic.
bioRxiv,
Preprint posted October 07, 2020,
2020.
Preprint
67 - Taboada,B., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramos-Cervantes,P., Escalera-Zamudio,M., Boukadida,C., Sanchez-Flores,A., Isa,P., Mendieta-Condado,E., Martinez-Orozco,J.A., Becerril-Vargas,E., Salas-Hernandez,J., Grande,R., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Vazquez,G., Pulido,F., Araiza-Rodriguez,A., Garces-Ayala,F., Gonzalez-Bonilla,C.R., Grajales-Muniz,C., Borja-Aburto,V.H, Barrera-Badillo,G, Lopez,S., Hernandez-Rivas,L, Perez-Padilla,R, Lopez Martinez,I, Avila-Rios,S, Ruiz-Palacios,G, Ramirez-Gonzalez,J.E, Arias,C.F. (2020). Genomic analysis of early SARS-CoV-2 strains introduced in Mexico.
bioRxiv,
Preprint posted May 30,
120402.
Preprint
68 - Escalera-Zamudio,M., Cobian-Guemes,A.G., Taboada,B., Lopez-Martinez,I., Vazquez-Perez,J.A., Montalvo-Corral,M., Hernandez,J., Diaz-Quinonez,J.A., Barrera-Badillo,G, Lopez,S, Arias,C.F, Isa,P. (2019). Efficient whole genome sequencing of influenza A viruses.
bioRxiv,
Preprint posted August 29, 2019,
749234.
Nacional
69 - Taboada,B., Larralde,P., Brito,T., Vega-Alvarado,L., Diaz,R., Galindo,E., Corkidi,G. (2003). Images acquisition of multiphase dispersion in fermentation processes.
Journal of Applied Research and Technology,
1 (1),
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70 - Taboada Ramirez, Blanca Itzelt (2012). Identificacionin silicode operonesen genomas bacterianos basadaen redes neuronales .
Doctora en Ciencias (Computacion),
UNAM.
*
Asesor: Merino Perez, Enrique, Verde Rodarte, Maria Cristina
Artículo
71 - Zarate,A., Diaz-Gonzalez,L., Taboada,B.. VirDetect-AI: a residual and convolutional neural network-based metagenomic tool for eukaryotic viral protein identification.
Briefings in Bioinformatics,
26 (1),
bbaf001.
Nacional divulgación
72 - Taboada-Ramirez,B.I., Zarate-Guerra,C.S.. El papel de la bioinformática en la lucha contra los virus.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
10 (40).
Artículo
73 - Garcia-Lopez,R., Taboada,B., Zarate,S., Munoz-Medina,J.E., Salas-Lais,A.G., Herrera-Estrella,A., Boukadida,C., Vazquez-Perez,J.A., Gomez-Gil,B., Sanchez-Flores,A., Arias,C.F.. Exploration of low-frequency allelic variants of SARS-CoV-2 genomes reveals coinfections in Mexico occurred during periods of VOCs turnover.
Microbial Genomics,
10 (3),
001220.
Artículo
74 - Cadenas-Castrejon,E., Verleyen,J., Boukadida,C., Diaz-Gonzalez,L., Taboada,B.. Evaluation of tools for taxonomic classification of viruses.
Briefings in Functional Genomics,
22 (1),
31-41.
Artículo
75 - Castelan-Sanchez,H.G., Delaye,L., Inward,R.P.D., Dellicour,S., Gutierrez,B., Martinez de la Vina,N., Boukadida,C., Pybus,O.G., de Anda Jauregui,G., Guzman,P., Flores-Garrido,M., Fontanelli,O., Hernandez-Rosales,M., Meneses,A., Olmedo-Alvarez,G., Herrera-Estrella,A., Sanchez-Flores,A., Munoz-Medina,J.E., Comas-Garcia,A., Gomez-Gil,B., Zarate,S., Taboada,B., Lopez,S., Arias,C.F., Kraemer,M.U.G., Lazcano,A., Escalera-Zamudio,M.. Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico.
Elife,
12,
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76 - Garcia-Lopez,R., Rivera-Gutierrez,X., Rosales-Rivera,M., Zarate,S., Munoz-Medina,J.E., Roche,B., Herrera-Estrella,A., Gomez-Gil,B., Sanchez-Flores,A., Taboada,B., Arias,C.F.. SARS-CoV-2 BW lineage, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations.
Infection,
51,
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Artículo
77 - Loza,A., Wong-Chew,R.M., Jimenez-Corona,M.E., Zarate,S., Lopez,S., Ciria,R., Palomares,D., Garcia-Lopez,R., Isa,P., Taboada,B., Rosales,M., Boukadida,C., Herrera-Estrella,A., Mojica,N.S., Rivera-Gutierrez,X., Munoz-Medina,J.E., Salas-Lais,A.G., Sanchez-Flores,A., Vazquez-Perez,J.A., Arias,C.F., Gutierrez-Rios,R.M.. Two-year follow-up of the COVID-19 pandemic in Mexico.
Frontiers in Public Health,
10,
1050673.
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78 - Perez-Juarez,H., Serrano-Vazquez,A., Godinez-Alvarez,H., Gonzalez,E., Rojas-Velazquez,L., Moran,P., Portillo-Bobadilla,T., Ramiro,M., Hernandez,E., Lau,C., Martinez,M., Padilla,M.L.A., Zaragoza,M.E., Taboada,B., Palomares,L.A., Lopez,S., Alagon,A., Arias,C.F., Ximenez,C.. Longitudinal anti-SARS-CoV-2 antibody immune response in acute and convalescent patients.
Frontiers in Cellular and Infection Microbiology,
13,
1239700.
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79 - Rivera-Gutierrez,X., Moran,P., Taboada,B., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F.. The fecal and oropharyngeal eukaryotic viromes of healthy infants during the first year of life are personal.
Scientific Reports,
13 (1),
938.
Artículo
80 - Taboada,B.I., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J.E., Gomez-Gil,B., Herrera-Estrella,A., Sanchez-Flores,A., Salas-Lais,A.G., Roche,B., Martinez-Morales,G., Dominguez-Zarate,H., Duque-Molina,C., Aviles-Hernandez,R., Lopez,S., Arias,C.F.. SARS-CoV-2 Omicron variants BA.4 and BA.5 dominated the fifth COVID-19 epidemiological wave in Mexico.
Microbial Genomics,
9 (12),
001120.
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81 - Zarate,S., Taboada,B., Rosales-Rivera,M., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Gomez-Gil,B., Selem-Mojica N., Salas-Lais,A.G., Vazquez-Perez,J.A., Cabrera-Gaytan,D.A., Fernandes-Matano,L., Uribe-Noguez,L.A., Chale-Dzul,J.B., Maldonado Meza,B.I., Mejia-Nepomuceno,F., Perez-Padilla,R., Gutierrez-Rios,R.M., Loza,A, Roche,B, Lopez,S, Arias,C.F. Omicron-BA.1 Dispersion Rates in Mexico Varied According to the Regional Epidemic Patterns and the Diversity of Local Delta Subvariants.
Viruses,
15 (1),
243.
Preprint
82 - Taboada,B., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J., Gomez-Gil,B., Herrera-Estrella,A., Sanchez-Flores,A., Salas-Lais,A.G., Roche,B., Martinez-Morales,G., Dominguez-Zarate,H., Duque-Molina,C., Aviles-Hernandez,R., Lopez,S., Arias,C.F.. SARS-CoV-2 Omicron variants BA.4 and BA.5 dominated the fifth COVID-19 epidemiological wave in Mexico.
Authorea,
Preprint.
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83 - Boukadida,C., Taboada,B., Escalera-Zamudio,M., Isa,P., Ramirez-Gonzalez,J.E., Vazquez-Perez,J.A., Munoz-Medina,J.E., Grajales-Muniz,C., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Rincon-Rubio,A., Matias-Florentino,M., Paz-Juarez,H.E., Sanchez-Flores,A., Mendieta-Condado,E., Barrera-Badillo,G., Hernandez-Rivas,L., Lopez,S., Lopez-Martinez,I, Avila-Rios,S., Arias,C.F.. Genomic Characterization of SARS-CoV-2 Isolated from Patients with Distinct Disease Outcomes in Mexico.
Microbiology Spectrum,
10 (1),
e01249-21.
Artículo
84 - Hernandez-Teran,A., Garciadiego-Fossas,P, Villanueva-Reza,M, Boukadida,C, Taboada,B, Porras,E, Ahumada-Topete,V., Tapia-Diaz,K.E, Matias-Florentino,M., Perez-Garcia,M., Avila-Rios,S., Mejia-Nepomuceno,F, Serna-Munoz,R, Juarez-Hernandez,F., Jimenez-Corona,M.E., Becerril-Vargas,E, Barreto,O, Martinez-Orozco,J.A, Perez-Padilla,R., Arias,C.F, Vazquez-Perez,J.A.. Clinical and Virological Features of Patients Hospitalized with Different Types of COVID-19 Vaccination in Mexico City.
Vaccines (Basel),
10 (8).
Artículo
85 - Isa,P., Taboada,B., Garcia-Lopez,R., Boukadida,C., Ramirez-Gonzalez,J.E., Vazquez-Perez,J.A., Hernandez-Teran,A., Romero-Espinoza,J.A., Munoz-Medina,J.E., Grajales-Muniz,C., Rincon-Rubio,A., Matias-Florentino,M., Sanchez-Flores,A., Mendieta-Condado,E., Barrera-Badillo,G., Lopez,S., Hernandez-Rivas,L., Lopez-Martinez,I., Avila-Rios,S., Arias,C.F.. Metagenomic analysis reveals differences in the co-occurrence and abundance of viral species in SARS-CoV-2 patients with different severity of disease.
BMC Infectious Diseases,
22 (1),
792.
Artículo
86 - Rivera-Gutierrez,X., Moran,P., Taboada,B., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F.. High Prevalence and Diversity of Caliciviruses in a Community Setting Determined by a Metagenomic Approach.
Microbiology Spectrum,
10 (1),
e0185321.
Artículo
87 - Taboada,B., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Boukadida,C., Gomez-Gil,B., Selem-Mojica N., Rosales-Rivera,M., Salas-Lais,A.G., Gutierrez-Rios,R.M., Loza,A., Rivera-Gutierrez,X., Vazquez-Perez,J.A., Avila-Rios,S., Hurtado,J.M., Herrera-Najera,C.I., Nunez-Contreras,J.J., Sarquiz-Martinez,B, Garcia-Arias,V.E., Santiago-Mauricio,M.G., Martinez-Miguel,B., Enciso-Ibarra,J., Chaidez-Quiroz,C., Isa,P., Wong-Chew,R.M., Jimenez-Corona,M.E., Lopez,S., Arias,C.F.. Dominance of Three Sublineages of the SARS-CoV-2 Delta Variant in Mexico.
Viruses,
14 (6),
1165.
Artículo
88 - Zarate,S., Taboada,B., Munoz-Medina,J.E., Isa,P., Sanchez-Flores,A., Boukadida,C., Herrera-Estrella,A., Selem-Mojica N., Rosales-Rivera,M., Gomez-Gil,B., Salas-Lais,A.G., Santacruz-Tinoco,C.E., Montoya-Fuentes,H., ALvarado-Yaah,J.E., Molina-Salinas,G.M., Espinoza-Ayala,G.E., Enciso-Moreno,J.A., Gutierrez-Rios,R.M., Loza,A., Moreno-Contreras,J., Garcia-Lopez,R., Rivera-Gutierrez,X., Comas-Garcia,A., Wong-Chew,R.M., Jimenez-Corona,M.E., del Angel,R.M., Vazquez-Perez,J.A., Matias-Florentino,M., Perez-Garcia,M., Avila-Rios,S., Castelan-Sanchez,H.G., Delaye,L., Martinez-Castilla,L.P., Escalera-Zamudio,M., Lopez,S., Arias,C.F.. The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in Mexico.
Microbiology Spectrum,
10 (2),
e0224021.
Preprint
89 - Castelan-Sanchez,H.G., Delaye,L., Inward,R.P.D., Dellicour,S., Gutierrez,B., Martinez de la Vina,N., Pybus,O.G., de Anda Jauregui,G., Guzman,P., Flores-Garrido,M., Fontanelli,O., Hernandez-Rosales,M., Meneses,A., Olmedo-Alvarez,G., Herrera-Estrella,A., Boukadida,C., Sanchez-Flores,A., Munoz-Medina,J.E., Comas-Garcia,A., Gomez-Gil,B., Zarate,S., Taboada,B., Lopez,S., Arias,C.F., Kraemer,M.U.G., Lazcano,A., Escalera-Zamudio,M.. Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico_.
bioRxiv,
Preprint posted August 10.
Preprint
90 - Garcia-Lopez,R., Rivera-Gutierrez,X., Rosales-Rivera,M., Taboada,B., Zarate,S., Munoz-Medina,J.E., Roche,B., Herrera-Estrella,A., Gomez-Gil,B., Sanchez-Flores,A., Arias,C.F.. SARS-CoV-2 BW.1, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations.
Research Square,
Preprint 21 Nov.
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91 - Garcia-Hernandez,M.E., Trujillo-Ortega,M.E., Alcaraz-Estrada,S.L., Lozano-Aguirre-Beltran,L., Sandoval-Jaime,C., Taboada-Ramirez,B.I., Sarmiento-Silva,R.E.. Molecular Detection and Characterization of Porcine Epidemic Diarrhea Virus and Porcine Aichivirus C Coinfection in Mexico.
Viruses,
13 (5),
738.
Artículo
92 - Rodriguez-Maldonado,A.P., Vazquez-Perez,J.A., Cedro-Tanda,A., Taboada,B., Boukadida,C., Wong-Arambula,C., Nunez-Garcia,T.E., Cruz-Ortiz,N., Barrera-Badillo,G., Hernandez-Rivas L., Lopez-Martinez,I., Mendoza-Vargas,A., Reyes-Grajeda,J.P., Alcaraz,N., Penaloza-Figueroa,F., Gonzalez-Barrera,D., Rangel-DeLeon,D., Herrera-Montalvo,L.A., Mejia-Nepomuceno,F., Hernandez-Teran,A., Mujica-Sanchez,M., Becerril-Vargas,E., Martinez-Orozco,J.A., Perez-Padilla,R., Salas-Hernandez,J., Sanchez-Flores,A., Isa,P., Matias-Florentino,M., Avila-Rios,S., Munoz-Medina,J.E., Grajales-Muniz,C., Salas-Lais,A.G., Santos Coy-Arechavaleta,A., Hidalgo-Miranda,A., Arias,C.F., Ramirez-Gonzalez,J.E.. Emergence and spread of the potential variant of interest (VOI) B.1.1.519 of SARS-CoV-2 predominantly present in Mexico.
Archives of Virology,
166,
3173-3177.
Artículo
93 - Taboada,B., Moran,P., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F.. The gut virome of healthy children during the first year of life is diverse and dynamic.
PLoS ONE,
16 (4),
e0240958.
Artículo
94 - Taboada-Ramirez,B., Zarate,S., Isa,P., Boukadida,C., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramirez-Gonzalez,J.E., Comas-Garcia,A., Grajales-Muniz,C., Rincon-Rubio,A., Matias-Florentino,M., Sanchez-Flores,A., Mendieta-Condado,E., Verleyen,J., Barrera-Badillo,G., Hernandez-Rivas,L., Mejia-Nepomuceno,F., Martinez-Orozco,J.A., Becerril-Vargas,E., Lopez,S., Lopez-Martinez,I., Avila-Rios,S., Arias,C.F.. Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic.
Viruses,
13 (11),
2161.
preprint
95 - Rodriguez-Maldonado,A.P., Vazquez-Perez,J.A., Cedro-Tanda,A., Taboada,B., Boukadida,C., Wong-Arambula,C., Nunez-Garcia,T.E., Cruz-Ortiz,N., Barrera-Badillo,G., Hernandez-Rivas L., Lopez-Martinez,I., Mendoza-Vargas,A., Reyes-Grajeda,J.P., Alcaraz,N., Penaloza-Figueroa,F., Gonzalez-Barrera,D., Rangel-DeLeon,D., Herrera-Montalvo,L.A., Mejia-Nepomuceno,F., Hernandez-Teran,A., Mujica-Sanchez,M., Becerril-Vargas,E., Martinez-Orozco,J.A., Perez-Padilla,R., Salas-Hernandez,J., Sanchez-Flores,A., Isa,P., Matias-Florentino,M., Avila-Rios,S., Munoz-Medina,J.E., Grajales-Muniz,C., Salas-Lais,A.G., Santos Coy-Arechavaleta,A., Hidalgo-Miranda,A., Arias,C.F., Ramirez-Gonzalez,J.E.. Emergence and spread of the potential variant of interest (VOI) B.1.1.519 of SARS-CoV-2 predominantly present in Mexico.
Medarxiv,
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96 - Aguado-Garcia,Y., Taboada,B., Moran,P., Rivera-Gutierrez,X., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F.. Tobamoviruses can be frequently present in the oropharynx and gut of infants during their first year of life.
Scientific Reports,
10 (1),
13595.
Artículo
97 - Lopez-Santaella,T., Alvarez y Munoz,T., Medeiros-Domingo,M., Moreno-Espinosa,S., Consuelo-Sanchez,A., Munoz-Hernandez,O., Sarmiento-Silva,R.E., Sotomayor-Gonzalez,A., Trujillo-Ortega,M.E., Garcia-Hernandez,M.E., Taboada-Ramirez,B.I., Arenas-Huertero,F.. Serological and molecular study of Hepatitis E virus in pediatric patients in Mexico.
Annals of Hepatology,
19 (3),
295-301.
Artículo
98 - Ramirez,D., Vega-Alvarado,L., Taboada,B., Estradas-Romero,A., Soto,L., Juarez,K.. Bacterial diversity in surface sediments from the continental shelf and slope of the North West gulf of Mexico and the presence of hydrocarbon degrading bacteria.
Marine Pollution Bulletin,
150,
110590.
Artículo
99 - Taboada,B., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramos-Cervantes P., Escalera-Zamudio,M., Boukadida,C., Sanchez-Flores,A., Isa,P., Mendieta-Condado E., Martinez-Orozco,J.A., Becerril-Vargas,E., Salas-Hernandez,J., Grande,R., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Vazquez,G., Pulido,F., Araiza-Rodriguez A., Garces-Ayala F., Gonzalez-Bonilla,C.R., Grajales-Muniz C., Borja-Aburto,V, Barrera-Badillo G., Lopez,S., Hernandez-Rivas L., Perez-Padilla,R., Lopez-Martinez,I, Avila-Rios,S., Ruiz-Palacios,G., Ramirez-Gonzalez,J.E., Arias,C.F.. Genomic Analysis of Early SARS-CoV-2 Variants Introduced in Mexico.
Journal of Virology,
94 (18),
e01056-20.
Preprint
100 - Arias,C.F., Taboada,B., Moran,P., Isa,P., Serrano-Vazquez,A., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C.. The gut virome of healthy children during the first year of life is diverse and dynamic.
bioRxiv,
Preprint posted October 07, 2020,
2020.
Preprint
101 - Taboada,B., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramos-Cervantes,P., Escalera-Zamudio,M., Boukadida,C., Sanchez-Flores,A., Isa,P., Mendieta-Condado,E., Martinez-Orozco,J.A., Becerril-Vargas,E., Salas-Hernandez,J., Grande,R., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Vazquez,G., Pulido,F., Araiza-Rodriguez,A., Garces-Ayala,F., Gonzalez-Bonilla,C.R., Grajales-Muniz,C., Borja-Aburto,V.H, Barrera-Badillo,G, Lopez,S., Hernandez-Rivas,L, Perez-Padilla,R, Lopez Martinez,I, Avila-Rios,S, Ruiz-Palacios,G, Ramirez-Gonzalez,J.E, Arias,C.F.. Genomic analysis of early SARS-CoV-2 strains introduced in Mexico.
bioRxiv,
Preprint posted May 30,
120402.
Artículo
102 - Zarate,S., Hernandez-Perez,F., Taboada,B., Martinez,N.E., Alcaraz-Estrada,S.L., Del Moral O., Yocupicio-Monroy,M.. Complete genome of DENV2 isolated from mosquitoes in Mexico.
Infection, Genetics and Evolution,
71,
98-107.
Preprint
103 - Escalera-Zamudio,M., Cobian-Guemes,A.G., Taboada,B., Lopez-Martinez,I., Vazquez-Perez,J.A., Montalvo-Corral,M., Hernandez,J., Diaz-Quinonez,J.A., Barrera-Badillo,G, Lopez,S, Arias,C.F, Isa,P.. Efficient whole genome sequencing of influenza A viruses.
bioRxiv,
Preprint posted August 29, 2019,
749234.
Artículo
104 - Escalera-Zamudio, M., Taboada, B., Rojas-Anaya, E., Lober, U., Loza-Rubio, E., Arias, C.F., Greenwood, A.D.. Viral Communities Among Sympatric Vampire Bats and Cattle.
Ecohealth,
15 (1),
102409,
132-142.
Artículo
105 - Sotomayor-Gonzalez, A., Trujillo-Ortega, M.E., Taboada-Ramirez, B.I., Sandoval-Jaime, C., Sarmiento-Silva, R.E.. Phylogenetic Analysis and Characterization of the Complete Hepatitis E Virus Genome (Zoonotic Genotype 3) in Swine Samples from Mexico.
Viruses,
10 (8),
391.
Artículo
106 - Taboada, B., Estrada, K., Ciria, R., Merino, E.. Operon-mapper: A Web Server for Precise Operon Identification in Bacterial and Archaeal Genomes.
Bioinformatics,
34 (23),
4118?4120.
Artículo
107 - Taboada,B., Isa,P., Gutierrez-Escolano,A.L., del Angel,R.M., Ludert,J.E., Vazquez,N., Tapia-Palacios,M.A., Chavez,P., Garrido,E., Espinosa,A.C., Eguiarte,L.E., Lopez,S., Souza,V., Arias,C.F.. The Geographic Structure of Viruses in the Cuatro Cienegas Basin, a Unique Oasis in Northern Mexico, Reveals a Highly Diverse Population on a Small Geographic Scale.
Applied and Environmental Microbiology,
84 (11),
e00465-18.
Revisión
108 - Zarate, S., Taboada, B., Yocupicio-Monroy, M., Arias, C.F.. The Human Virome.
Archives of Medical Research,
48 (8),
701-716.
Artículo
109 - Zepeda Mendoza, M.L., Xiong, Z., Escalera-Zamudio, M., Runge, A.K., Theze, J., Streicker, D., Frank, H.K., Loza-Rubio, E., Liu, S., Ryder, O.A., Samaniego Castruita, J.A., Katzourakis, A., Pacheco, G., Taboada, B., Lober, U., Pybus, O.G., Li, Y., Rojas-Anaya, E., Bohmann, K., Carmona, Baez A., Arias, C.F., Liu, S., Greenwood, A.D., Bertelsen, M.F., White, N.E., Bunce, M., Zhang, G., Sicheritz-Ponten, T., Gilbert, M.P.T.. Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat.
Nature Ecology & Evolution,
2,
659-668.
Internacional
110 - Isa, P., Taboada, B., Gutiérrez, A. L., Chávez, P., del Ángel, R. M., Ludert, J. E., Espinosa, A. C., Eguiarte, L. E., Garrido, E., López, S., Souza, V., Arias, C. F.. Hyperdiverse Viral Communities in an Oligotrophic Oasis (Cuatro Ciénegas): Marine Affinities and Microgeographic Differentiation. Cuatro Ciénegas Ecology, Natural History and Microbiology.
Cuatro Ciénegas Basin: An Endangered Hyperdiverse Oasis ,
43-55,
Cham: Springer International Publishing.
Memoria in extenso
111 - Ortuno,S.Y., Hernandez-Aguilar,J.A., Taboada,B., Ochoa-Ortiz,C.A., Ramirez,M.P, Arroyo-Figueroa,G.. The use of artificial intelligence for the intrusion detection system in computer networks. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).
16th Mexican International Conference on Artificial Intelligence, MICAI 2017; Ensenada; Mexico; 23 October 2017 through 28 October 2017; Code 222589,
302-312,
10632 LNAI.
Artículo
112 - Escalera-Zamudio,M., Rojas-Anaya,E., Kolokotronis,S.O., Taboada,B., Loza-Rubio,E., Mendez-Ojeda,M.L., Arias,C.F., Osterrieder,N., Greenwood,A.D.. Bats, Primates, and the Evolutionary Origins and Diversification of Mammalian Gammaherpesviruses.
MBio,
7 (6),
e01425-16.
Artículo
113 - Taboada,B.T., Isa,P., Espinoza,M.A., Aponte,F.E., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Wong-Chew,R.M., Firo-Reyes,V., Del Rio-Almendarez,C.N., Gaitan-Meza,J., Villasenor-Sierra,A., Martinez-Aguilar,G., Garcia-Borjas,M., Noyola,D.E., Perez-Gonzalez,L.F., Lopez,S., Santos-Preciado,J.I., Arias,C.F.. Complete Genome Sequence of Human Coronavirus OC43 Isolated from Mexico.
Genome Announcements,
4 (6).
Artículo
114 - Aponte,F.E., Taboada,B., Espinoza,M.A., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Wong-Chew,R.M., Firo-Reyes,V., Del Rio-Almendarez,C.N., Gaitan-Meza,J., Villasenor-Sierra,A., Martinez-Aguilar,G., Garcia-Borjas,M., Noyola,D.E., Perez-Gonzalez,L.F., Lopez,S., Santos-Preciado,J.I., Arias,C.F.. Rhinovirus is an important pathogen in upper and lower respiratory tract infections in Mexican children.
Virology Journal,
12,
31.
Artículo
115 - Escalera-Zamudio,M., Zepeda-Mendoza,M.L., Heeger,F., Loza-Rubio,E., Rojas-Anaya,E., Mendez-Ojeda,M.L., Taboada,B., Mazzoni,C.J., Arias,C.F., Greenwood,A.D.. A novel endogenous betaretrovirus in the common vampire bat (Desmodus rotundus) suggests multiple independent infection and cross-species transmission events.
Journal of Virology,
89 (9),
5180-5184.
Artículo
116 - Wong-Chew,R.M., Espinoza,M.A., Taboada,B., Aponte,F.E., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Santos-Preciado,J.I., Lopez,S., Arias,C.F.. Prevalence of respiratory virus in symptomatic children in private physician office settings in five communities of the state of Veracruz, Mexico.
BMC Research Notes,
8 (1),
261.
Artículo
117 - Taboada,B., Espinoza,M.A., Isa,P., Aponte,F.E., Arias-Ortiz,M.A., Monge-Martinez,J., Rodriguez-Vazquez,R., Diaz-Hernandez,F., Zarate-Vidal,F., Wong-Chew,R.M., Firo-Reyes,V., Del Rio-Almendarez,C.N., Gaitan-Meza,J., Villasenor-Sierra,A., Martinez-Aguilar,G., Salas-Mier,M.D., Noyola,D.E., Perez-Gonzalez,L.F., Lopez,S., Santos-Preciado,J.I., Arias,C.F.. Is There Still Room for Novel Viral Pathogens in Pediatric Respiratory Tract Infections?.
PLoS ONE,
9 (11),
e113570.
Artículo
118 - Hidalgo-Millan,A., Taboada,B., Vega-Alvarado,L., Zenit,R., Ascanio,G.. Enhancement of laminar mixing in stirred vessel using geometrical perturbations.
Journal of Applied Research and Technology,
10 (4),
520-533.
Artículo
119 - Taboada,B., Ciria,R., Martinez-Guerrero,C.E., Merino,E.. ProOpDB: Prokaryotic Operon DataBase.
Nucleic Acids Research,
40 (1),
D627-D631.
120 - Taboada Ramirez, Blanca Itzelt. Identificacionin silicode operonesen genomas bacterianos basadaen redes neuronales .
Doctora en Ciencias (Computacion),
UNAM.
*
Asesor: Merino Perez, Enrique, Verde Rodarte, Maria Cristina
Artículo
121 - Gama-Castro,S., Salgado,H., Peralta-Gil,M., Santos-Zavaleta,A., Muniz-Rascado,L., Solano-Lira,H., Jimenez-Jacinto,V., Weiss,V., Garcia-Sotelo,J.S., Lopez-Fuentes,A., Porron-Sotelo,L., Alquicira-Hernandez,S., Medina-Rivera,A., Martinez-Flores,I., Alquicira-Hernandez,K., Martinez-Adame,R., Bonavides-Martinez,C., Miranda-Rios,J., Huerta,A.M., Mendoza-Vargas,A., Collado-Torres,L., Taboada,B., Vega-Alvarado,L., Olvera,M., Olvera,L., Grande,R., Morett,E., Collado-Vides,J.. RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units).
Nucleic Acids Research,
39 (Suppl 1),
D98-D105.
Artículo
122 - Vega-Alvarado,L., Taboada,B., Hidalgo-Millan,A., Ascanio,G.. An Image Analysis Method for the Measurement of Mixing Times in Stirred Vessels.
Chemical Engineering & Technology,
34 (6),
859-866.
*
Artículo
123 - Taboada,B., Verde,C., Merino,E.. High accuracy operon prediction method based on STRING database scores.
Nucleic Acids Research,
3812 (E130).
Artículo
124 - Mendoza-Vargas,A., Olvera,L., Olvera,M., Grande,R., Vega-Alvarado,L., Taboada,B., Jimenez-Jacinto,V., Salgado,H., Juarez,K., Contreras-Moreira,B., Huerta,A.M., Collado-Vides,J., Morett,E.. Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli.
PLoS ONE,
4 (10),
e7526.
Artículo
125 - Ascanio,G., Taboada,B., Tanguy,P.A.. Misting droplet size analysis in a metered film coater.
Chemical Engineering Research & Design,
86 (2),
215-218.
*
Artículo
126 - Corkidi,G., Voinson,T., Taboada,B.I., Cordova,M.S., Galindo,E.. Accurate determination of embedded particles within dispersed elements in multiphase dispersions, using a 3D micro-stereoscopic vision system.
Chemical Engineering Science,
63 (2),
317-329.
Artículo
127 - Corkidi,G., Taboada,B., Wood,C.D., Guerrero,A., Darszon,A.. Tracking sperm in three-dimensions.
Biochemical and Biophysical Research Communications,
373 (1),
125-129.
Memoria in extenso
128 - Corkidi,G., Taboada,B., Wood,C.D., Guerrero,A., Darszon,A.. Three-dimensional image acquisition system for multi-sperm tracking. Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on.
145-148.
Artículo
129 - Corkidi,G., Balderas-Ruiz,K.A., Taboada,B., Serrano-Carreon,L., Galindo,E.. Assessing mango anthracnose using a new three-dimensional image-analysis technique to quantify lesions on fruit.
Plant Pathology,
55 (2),
250-257.
Artículo
130 - Taboada,B., Vega-Alvarado,L., Cordova-Aguilar,M., Galindo,E., Corkidi,G.. Semi-automatic image analysis methodology for the segmentation of bubbles and drops in complex dispersions occurring in bioreactors.
Experiments in Fluids,
41 (3),
383-392.
Artículo
131 - Galindo,E., Larralde-Corona,C.P., Brito,T., Cordova-Aguilar,M.S., Taboada,B., Vega-Alvarado,L., Corkidi,G.. Development of advanced image analysis techniques for the in situ characterization of multiphase dispersions occurring in bioreactors.
Journal of Biotechnology,
116 (3),
261-270.
Internacional
132 - Vega-Alvarado,L., Cordova,M.S., Taboada,B., Galindo,E., Corkidi,G.. Online Sauter Diameter Measurement of Air Bubbles and Oil Drops in Stirred Bioreactors by Using Hough Transform. Lecture Notes in Computer Science.
834-840,
3212.
Memoria in extenso
133 - Taboada,B., Poggio,S., Camarena,L., Corkidi,G.. Automatic tracking and analysis system for free-swimming bacteria. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings.
906-909,
1.
Memoria in extenso
134 - Vega-Alvarado,L., Taboada,B., Galindo,E., Corkidi,G.. Hough transform based method for air bubbles and oil drops segmentation in dispersions ocurring in stirred bioreactors. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings.
735-738,
1.
Nacional
135 - Taboada,B., Larralde,P., Brito,T., Vega-Alvarado,L., Diaz,R., Galindo,E., Corkidi,G.. Images acquisition of multiphase dispersion in fermentation processes.
Journal of Applied Research and Technology,
1 (1),
78-84.