Bioinformática
Número de registros: 9
  • Vencidos
  • Regulación de la expresión genética a nivel global en bacterias, PRESUPUESTO UNAM, 2014 - 2020
  • Estudios de regulación de la expresión genética a nivel global en escherichia coli y geobacter sulfurreducens utilizando estrategias de secuenciación masiva y herramientas bioinformáticas, CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 2012 - 2016
  • Desarrollo de metodologías robustas para el mapeo global de sitios de inicio de la transcripción en escherichia coli y geobacter sulfurreducens mediante secuenciación masiva de extremos 5´trifosfato de los mrna, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2012 - 2014
  • Mapeo global de sitios de inicio de transcripción en escherichia coli y otras bacterias por pirosecuenciación, CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 2009 - 2012
  • Evolución de las actividades enzimáticas involucradas en la biosíntesis de biotina, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2008 - 2010
  • Estudios estructurales de variantes de hema con actividad de biof obtenidas por evolución dirigida., DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2004 - 2006
  • Evolución de nuevas actividades enzimáticas: implementación de sistemas de selección eficientes para demostrar migración catalítica., CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 2002 - 2005
  • Migración de actividad enzimática por medio de evolución dirigida en un sistema de selección muy sensible, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 1999 - 2002
  • Análisis genético de las interacciones moleculares durante la iniciación de la transcripción de bacterias: modificación del factor transcripcional sigma-54, CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 1997 - 1998

Nivel D del PRIDE
Nivel III del SNI
  • Doctorado, en Bioquímica, Universidad de Sussex, Laboratorio de Fijacion de Nitrogeno

  • Maestría, en Investigacion Biomedica Basica, UNAM (1986)

  • Licenciatura, Investigacion Biomedica Basica, UNAM (1984)

  • Doctorado
3 - Sanchez Sanchez, Brenda Janice (2012). Estandarizacion de una metodologia para la identificacion de sitios de inicio de la transcripcion dependientes de s70, en escherichia coli k12, mediante mapeo transcripcional in vitro. Instituto de Biotecnologia, Maestria en Ciencias Bioquimicas, UNAM.
Total de publicaciones: 74
  • Tipo
  • Fecha
Open Access Revisión
16 - Aguilar-Ordonez,I., Guzman-Linares,J., Ballesteros-Villascan,J., Miron-Toruno,F., Perez-Gonzalez,A., Garcia-Lopez,J., Cruz-Lopez,F., Morett,E. (2022). A Tale of Native American Whole-Genome Sequencing and Other Technologies. Diversity, 14 (8), 647.
Open Access Artículo
17 - Aguilar-Ordonez,I., Perez-Villatoro,F., Garcia-Ortiz,H., Barajas-Olmos,F., Ballesteros-Villascan,J., Gonzalez-Buenfil,R., Fresno,C., Garciarrubio,A., Fernandez-Lopez,J.C., Tovar,H., Hernandez-Lemus,E., Orozco,L., Soberon,X., Morett,E. (2021). Whole genome variation in 27 Mexican indigenous populations, demographic and biomedical insights. PLoS ONE, 16 (4), e0249773, [correction May 25 2022].
Open Access Artículo
19 - Lara,P., Vega-Alvarado,L., Sahonero-Canavesi,D.X., Koenen,M., Villanueva,L., Riveros-McKay,F., Morett,E., Juarez,K. (2021). Transcriptome Analysis Reveals Cr(VI) Adaptation Mechanisms in Klebsiella sp. Strain AqSCr. Frontiers in Microbiology, 12, 656589.
Open Access Artículo
21 - Jasso-Chavez,R., Lira-Silva,E., Gonzalez-Sanchez,K., Larios-Serrato,V., Mendoza-Monzoy,D.L., Perez-Villatoro,F., Morett,E., Vega-Segura,A., Torres-Marquez,M.E., Zepeda-Rodriguez,A., Moreno-Sanchez,R. (2019). Marine Archaeon Methanosarcina acetivorans Enhances Polyphosphate Metabolism Under Persistent Cadmium Stress. Frontiers in Microbiology, 10, 2432.
Artículo; Actas Paper
Open Access Artículo
24 - Romero-Hidalgo, S., Ochoa-Leyva, A., Garciarrubio, A., Acuna-Alonzo, V., Antunez-Arguelles, E., Balcazar-Quintero, M., Barquera-Lozano, R., Carnevale, A., Cornejo-Granados, F., Fernandez-Lopez, J.C., Garcia-Herrera, R., Garcia-Ortiz, H., Granados-Silvestre, A., Granados, J., Guerrero-Romero, F., Hernandez-Lemus, E., Leon-Mimila, P., Macin-Perez, G., Martinez-Hernandez, A., Menjivar, M., Morett, E., Orozco, L., Ortiz-Lopez, G., Perez-Villatoro, F., Rivera-Morales, J., Riveros-McKay, F., Villalobos-Comparan, M., Villamil-Ramirez, H., Villarreal-Molina, T., Canizales-Quinteros, S., Soberon, X. (2017). Demographic history and biologically relevant genetic variation of Native Mexicans inferred from whole-genome sequencing. Nature Communications, 8 (1), 1005.
Artículo
Open Access Artículo
27 - Meysman,P., Collado-Vides,J., Morett,E., Viola,R., Engelen,K., Laukens,K. (2014). Structural properties of prokaryotic promoter regions correlate with functional features. PLoS ONE, 9 (2), e88717.
Open Access Artículo
28 - Balderas-Martinez,Y.I., Savageau,M., Salgado,H., Perez-Rueda,E., Morett,E., Collado-Vides,J. (2013). Transcription Factors in Escherichia coli Prefer the Holo Conformation. PLoS ONE, 8 (6), e65723.
Open Access Artículo
29 - Salgado,H., Peralta-Gil,M., Gama-Castro,S., Santos-Zavaleta,A., Muniz-Rascado,L., Garcia-Sotelo,J.S., Weiss,V., Solano-Lira,H., Martinez-Flores,I., Medina-Rivera,A., Salgado-Osorio,G., Alquicira-Hernandez,S., Alquicira-Hernandez,K., Lopez-Fuentes,A., Porron-Sotelo,L., Huerta,A.M., Bonavides-Martinez,C., Balderas-Martinez,Y.I., Pannier,L., Olvera,M., Labastida,A., Jimenez-Jacinto,V., Vega-Alvarado,L., Del Moral-Chavez,V., Hernandez-Alvarez,A., Morett,E., Collado-Vides,J. (2013). RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Research, 41 (D1), D203-D213.
Artículo
30 - Weiss,V., Medina-Rivera,A., Huerta,A.M., Santos-Zavaleta,A., Salgado,H., Morett,E., Collado-Vides,J. (2013). Evidence classification of high-throughput protocols and confidence integration in RegulonDB. Database (Oxford), 2013, bas059.
Open Access Artículo
35 - Gama-Castro,S., Salgado,H., Peralta-Gil,M., Santos-Zavaleta,A., Muniz-Rascado,L., Solano-Lira,H., Jimenez-Jacinto,V., Weiss,V., Garcia-Sotelo,J.S., Lopez-Fuentes,A., Porron-Sotelo,L., Alquicira-Hernandez,S., Medina-Rivera,A., Martinez-Flores,I., Alquicira-Hernandez,K., Martinez-Adame,R., Bonavides-Martinez,C., Miranda-Rios,J., Huerta,A.M., Mendoza-Vargas,A., Collado-Torres,L., Taboada,B., Vega-Alvarado,L., Olvera,M., Olvera,L., Grande,R., Morett,E., Collado-Vides,J. (2011). RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). Nucleic Acids Research, 39 (Suppl 1), D98-D105.
Artículo
36 - Massimelli,M.J., Sanchez,D.G., Buchieri,M.V., Olvera,L., Beassoni,P.R., Schweizer,H.P., Morett,E., Lisa,A.T. (2011). Choline catabolism, sigma(54) factor and NtrC are required for the full expression of the Pseudomonas aeruginosa phosphorylcholine phosphatase gene. Microbiological Research, 166 (5), 380-390.
Open Access Revisión
37 - Collado-Vides,J., Salgado,H., Morett,E., Gama-Castro,S., Jimenez-Jacinto,V., Martinez-Flores,I., Medina-Rivera,A., Muniz-Rascado,L., Peralta-Gil,M., Santos-Zavaleta,A. (2009). Bioinformatics resources for the study of gene regulation in bacteria. Journal of Bacteriology, 191 (1), 23-31.
Open Access Artículo
40 - Gama-Castro,S., Jimenez-Jacinto,V., Peralta-Gil,M., Santos-Zavaleta,A., Penaloza-Spinola,M.I., Contreras-Moreira,B., Segura-Salazar,J., Muniz-Rascado,L., Martinez-Flores,I., Salgado,H., Bonavides-Martinez,C., Abreu-Goodger,C., Rodriguez-Penagos,C., Miranda-Rios,J., Morett,E., Merino,E., Huerta,A.M., Trevino-Quintanilla,L., Collado-Vides,J. (2008). RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nucleic Acids Research, 36 (Database issue), D120-D124.
Open Access Artículo
42 - Watanabe,R.L., Morett,E., Vallejo,E.E. (2008). Inferring modules of functionally interacting proteins using the Bond Energy Algorithm. BMC Bioinformatics, 9 (1), 285.
Open Access Artículo
43 - Dago,A.E., Wigneshweraraj,S.R., Buck,M., Morett,E. (2007). A role for the conserved GAFTGA motif of AAA transcriptional activators in sensing promoter DNA conformation. Journal of Biological Chemistry, 282 (2), 1087-1097.
Artículo
44 - Hernandez-Urzua,E., Zamorano-Sanchez,D.S., Ponce-Coria,J., Morett,E., Grogan,S., Poole,R.K., Membrillo-Hernandez,J. (2007). Multiple regulators of the Flavohaemoglobin (hmp) gene of Salmonella enterica serovar Typhimurium include RamA, a transcriptional regulator conferring the multidrug resistance phenotype. Archives of Microbiology, 187 (1), 67-77.
Artículo; Actas Paper
45 - Aguilar-Diaz,H., Bobes,R.J., Carrero,J.C., Camacho-Carranza,R., Cervantes,C., Cevallos,M.A., Davila,G., Rodriguez-Dorantes,M., Escobedo,G., Fernandez,J.L., Fragoso,G., Gaytan,P., Garciarrubio,A., Gonzalez,V.M., Gonzalez,L., Jose,M.V., Jimenez,L., Laclette,J.P., Landa,A., Larralde,C., Morales-Montor,J., Morett,E., Ostoa-Saloma,P., Sciutto,E., Santamaria,R.I., Soberon,X., de la Torre P., Valdes,V., Yanez,J. (2006). The genome project of Taenia solium. Parasitology International, 55 (Suppl), S127-S130.
Open Access Artículo
46 - Avonce,N., Mendoza-Vargas,A., Morett,E., Iturriaga,G. (2006). Insights on the evolution of trehalose biosynthesis. BMC Evolutionary Biology, 6 (1), 109.
Open Access Artículo
47 - Huerta,A.M., Francino,M.P., Morett,E., Collado-Vides,J. (2006). Selection for Unequal Densities of sigma(70) Promoter-Like Signals in Different Regions of Large Bacterial Genomes. PLoS Genetics, 2 (11), e185.
Artículo
48 - Gaytan,P., Yanez,J., Grande,R., Morett,E., Soberon,X. (2005). Improving random mutagenesis by purification of the oligonucleotide variants. Combinatorial Chemistry & High Throughput Screening, 8 (6), 537-544.
Artículo
50 - Ciria,R., Abreu-Goodger,C., Morett,E., Merino,E. (2004). GeConT: gene context analysis. Bioinformatics, 20 (14), 2307-2308.
Artículo
52 - Morett,E., Korbel,J.O., Rajan,E., Saab-Rincon,G., Olvera,L., Olvera,M., Schmidt,S., Snel,B., Bork,P. (2003). Systematic discovery of analogous enzymes in thiamin biosynthesis. Nature Biotechnology, 21 (7), 790-795.
Open Access Artículo; Actas
53 - Morett,E., Korbel,J.O., Rajan,E., Saab-Rincon,G., Olvera,L., Olvera,M., Schmidt,S., Snel,B., Bork,P. (2002). Discovery of Analogous Enzymes in Thiamin Biosynthesis by Anticorrelation. Genome Informatics, 13, 365-366.
Artículo
54 - Chaney,M., Grande,R., Wigneshweraraj,S.R., Cannon,W., Casaz,P., Gallegos,M.T., Schumacher,J., Jones,S., Elderkin,S., Dago,A.E., Morett,E., Buck,M. (2001). Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes and Development, 15 (17), 2282-2294.
Artículo
55 - Juarez,K., Flores,H., Davila,S., Olvera,L., Gonzalez,V., Morett,E. (2000). Reciprocal domain evolution within a transactivator in a restricted sequence space. Proceedings of the National Academy of Sciences of the United States of America, 97 (7), 3314-3318.
Open Access Revisión
Artículo
58 - Morett,E., Bork,P. (1999). A novel transactivation domain in parkin. Trends in Biochemical Sciences, 24 (6), 229-231.
Artículo
Open Access Artículo
64 - Valderrama,B., Davalos,A., Girard,L., Morett,E., Mora,J. (1996). Regulatory proteins and cis-acting elements involved in the transcriptional control of Rhizobium etli reiterated nifH genes. Journal of Bacteriology, 178 (11), 3119-3126.
Open Access Artículo
65 - Barrios,H., Fischer,H.M., Hennecke,H., Morett,E. (1995). Overlapping promoters for two different RNA polymerase holoenzymes control Bradyrhizobium japonicum nifA expression. Journal of Bacteriology, 177 (7), 1760-1765. *
Open Access Artículo
67 - Morett,E., Fischer,H.M., Hennecke,H. (1991). Influence of oxygen on DNA binding, positive control, and stability of the Bradyrhizobium japonicum NifA regulatory protein. Journal of Bacteriology, 173 (11), 3478-3487. *
Open Access Artículo
68 - Cannon,W.V., Kreutzer,R., Kent,H.M., Morett,E., Buck,M. (1990). Activation of the Klebsiella pneumoniae nifU promoter: identification of multiple and overlapping upstream NifA binding sites. Nucleic Acids Research, 18 (7), 1693-1701. *
Artículo
69 - Morett,E., Kreutzer,R., Cannon,W., Buck,M. (1990). The influence of the Klebsiella pneumoniae regulatory gene nifL upon the transcriptional activator protein NifA. Molecular Microbiology, 4 (8), 1253-1258. *
Artículo
71 - Morett,E., Moreno,S., Espin,G. (1988). Transcription analysis of the three nifH genes of Rhizobium phaseoli with gene fusions. MGG Molecular & General Genetics, 213 (2-3), 499-504. *
Open Access Artículo
73 - Morett,E., Buck,M. (1988). NifA-dependent in vivo protection demonstrates that the upstream activator sequence of nif promoters is a protein binding site. Proceedings of the National Academy of Sciences of the United States of America, 85 (24), 9401-9405. *
Note
74 - Romero,D., Singleton,P.W., Segovia,L., Morett,E., Benbohlool,B., Palacios,R., Davila,G. (1988). Effect of Naturally Occurring nif Reiterations on Symbiotic Effectiveness in Rhizobium phaseoli. Applied and Environmental Microbiology, 54 (3), 848-850. *
Open Access Note
75 - Calderon,J., Morett,E., Mora,J. (1985). Omega-amidase pathway in the degradation of glutamine in Neurospora crassa. Journal of Bacteriology, 161 (2), 807-809. *
Nacional
77 - Gonzalez,G., Labastida,A., Jimenez,V., Vega,L., Olvera,M., Morett,E., Juarez,K. (2015). Genes involved in electron transfer mechanism in g. Sulfurreducens. Environmental Biotechnology and Engineering-2014. 1269-1276, 3, Mexico D.F..
Internacional
79 - Tapia,J.J., Morett,E., Vallejo,E.E. (2009). A clustering genetic algorithm for genomic data mining. Foundations of Computational Intelligence . Studies in Computational Intelligence, 249-275, 4, Berlin, Heidelberg: Springer.
Memoria in extenso
80 - Tapia,J.J., Vallejo,E.E., Morett,E. (2009). MOCEA: A multi-objective clustering evolutionary algorithm for inferring protein-protein functional interactions. Proceedings of the 11th Annual Genetic and Evolutionary Computation Conference, GECCO-2009. 1793-1794.
Memoria in extenso
81 - Molina-Lozano,H., Vallejo-Clemente,E.E., Morett-Sanchez,J.E. (2008). DNA sequence analysis using fuzzy grammars. IEEE International Conference on Fuzzy Systems. 1915-1921.
Memoria in extenso
82 - Martínez,M., Vallejo,E.E., Morett,E. (2007). Ancestral DNA sequence reconstruction using recursive genetic algorithms. Lecture Notes in Computer Science, vol 4828 cap 4. 390-400.
Memoria in extenso
83 - Fernandez,J.C., Vallejo,E.E., Morett,E. (2006). Fuzzy C-means for inferring functional coupling of proteins from their phylogenetic profiles. Computational Intelligence and Bioinformatics and Computational Biology, 2006. CIBCB '06. 2006 IEEE Symposium on. 1-8.
Memoria in extenso
84 - Watanabe,R., Vallejo,E.E., Morett,E. (2006). Inferring functional coupling of proteins using the Evolutionary Bond Energy Algorithm. Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB'06. 400-405.
Internacional
85 - Morett,E., Saab-Rincon,G., Merino,E., Bork,P., Rajan,E., Olvera,L., Olvera,M. (2003). High rate of gene displacement in vitamin biosynthesis pathways. Bioinformatics and genomes: current perspectives. 69-79, Norfolk,U.K..
Nacional
86 - Morett,E. (2001). Genetic regulation of nitrogen fixation: from ammonia ssimilation to protein evolution. Nitrogen Fixation Research Center XX Anniversary. 180-183.
Open Access nacional divulgación
87 - Aguilar,I., Guzman,J., Miron,F., Morett,E. (2021). Conociendo el Genoma Indígena Mexicano: el proyecto 100G-MX. Biotecnologia en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 26, 8-15.
Open Access Revisión
90 - Aguilar-Ordonez,I., Guzman-Linares,J., Ballesteros-Villascan,J., Miron-Toruno,F., Perez-Gonzalez,A., Garcia-Lopez,J., Cruz-Lopez,F., Morett,E.. A Tale of Native American Whole-Genome Sequencing and Other Technologies. Diversity, 14 (8), 647.
Open Access Artículo
91 - Aguilar-Ordonez,I., Perez-Villatoro,F., Garcia-Ortiz,H., Barajas-Olmos,F., Ballesteros-Villascan,J., Gonzalez-Buenfil,R., Fresno,C., Garciarrubio,A., Fernandez-Lopez,J.C., Tovar,H., Hernandez-Lemus,E., Orozco,L., Soberon,X., Morett,E.. Whole genome variation in 27 Mexican indigenous populations, demographic and biomedical insights. PLoS ONE, 16 (4), e0249773, [correction May 25 2022].
Open Access Artículo
Open Access Artículo
93 - Lara,P., Vega-Alvarado,L., Sahonero-Canavesi,D.X., Koenen,M., Villanueva,L., Riveros-McKay,F., Morett,E., Juarez,K.. Transcriptome Analysis Reveals Cr(VI) Adaptation Mechanisms in Klebsiella sp. Strain AqSCr. Frontiers in Microbiology, 12, 656589.
Open Access Artículo
Open Access nacional divulgación
95 - Aguilar,I., Guzman,J., Miron,F., Morett,E.. Conociendo el Genoma Indígena Mexicano: el proyecto 100G-MX. Biotecnologia en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 26, 8-15.
Open Access Artículo
96 - Jasso-Chavez,R., Lira-Silva,E., Gonzalez-Sanchez,K., Larios-Serrato,V., Mendoza-Monzoy,D.L., Perez-Villatoro,F., Morett,E., Vega-Segura,A., Torres-Marquez,M.E., Zepeda-Rodriguez,A., Moreno-Sanchez,R.. Marine Archaeon Methanosarcina acetivorans Enhances Polyphosphate Metabolism Under Persistent Cadmium Stress. Frontiers in Microbiology, 10, 2432.
Artículo; Actas Paper
Artículo; Actas Paper
Open Access Artículo
99 - Romero-Hidalgo, S., Ochoa-Leyva, A., Garciarrubio, A., Acuna-Alonzo, V., Antunez-Arguelles, E., Balcazar-Quintero, M., Barquera-Lozano, R., Carnevale, A., Cornejo-Granados, F., Fernandez-Lopez, J.C., Garcia-Herrera, R., Garcia-Ortiz, H., Granados-Silvestre, A., Granados, J., Guerrero-Romero, F., Hernandez-Lemus, E., Leon-Mimila, P., Macin-Perez, G., Martinez-Hernandez, A., Menjivar, M., Morett, E., Orozco, L., Ortiz-Lopez, G., Perez-Villatoro, F., Rivera-Morales, J., Riveros-McKay, F., Villalobos-Comparan, M., Villamil-Ramirez, H., Villarreal-Molina, T., Canizales-Quinteros, S., Soberon, X.. Demographic history and biologically relevant genetic variation of Native Mexicans inferred from whole-genome sequencing. Nature Communications, 8 (1), 1005.
Nacional
101 - Gonzalez,G., Labastida,A., Jimenez,V., Vega,L., Olvera,M., Morett,E., Juarez,K.. Genes involved in electron transfer mechanism in g. Sulfurreducens. Environmental Biotechnology and Engineering-2014. 1269-1276, 3, Mexico D.F..
Nacional
Artículo
Open Access Artículo
104 - Meysman,P., Collado-Vides,J., Morett,E., Viola,R., Engelen,K., Laukens,K.. Structural properties of prokaryotic promoter regions correlate with functional features. PLoS ONE, 9 (2), e88717.
Open Access Artículo
105 - Balderas-Martinez,Y.I., Savageau,M., Salgado,H., Perez-Rueda,E., Morett,E., Collado-Vides,J.. Transcription Factors in Escherichia coli Prefer the Holo Conformation. PLoS ONE, 8 (6), e65723.
Open Access Artículo
106 - Salgado,H., Peralta-Gil,M., Gama-Castro,S., Santos-Zavaleta,A., Muniz-Rascado,L., Garcia-Sotelo,J.S., Weiss,V., Solano-Lira,H., Martinez-Flores,I., Medina-Rivera,A., Salgado-Osorio,G., Alquicira-Hernandez,S., Alquicira-Hernandez,K., Lopez-Fuentes,A., Porron-Sotelo,L., Huerta,A.M., Bonavides-Martinez,C., Balderas-Martinez,Y.I., Pannier,L., Olvera,M., Labastida,A., Jimenez-Jacinto,V., Vega-Alvarado,L., Del Moral-Chavez,V., Hernandez-Alvarez,A., Morett,E., Collado-Vides,J.. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Research, 41 (D1), D203-D213.
Artículo
107 - Weiss,V., Medina-Rivera,A., Huerta,A.M., Santos-Zavaleta,A., Salgado,H., Morett,E., Collado-Vides,J.. Evidence classification of high-throughput protocols and confidence integration in RegulonDB. Database (Oxford), 2013, bas059.
Open Access Artículo
112 - Gama-Castro,S., Salgado,H., Peralta-Gil,M., Santos-Zavaleta,A., Muniz-Rascado,L., Solano-Lira,H., Jimenez-Jacinto,V., Weiss,V., Garcia-Sotelo,J.S., Lopez-Fuentes,A., Porron-Sotelo,L., Alquicira-Hernandez,S., Medina-Rivera,A., Martinez-Flores,I., Alquicira-Hernandez,K., Martinez-Adame,R., Bonavides-Martinez,C., Miranda-Rios,J., Huerta,A.M., Mendoza-Vargas,A., Collado-Torres,L., Taboada,B., Vega-Alvarado,L., Olvera,M., Olvera,L., Grande,R., Morett,E., Collado-Vides,J.. RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). Nucleic Acids Research, 39 (Suppl 1), D98-D105.
Artículo
113 - Massimelli,M.J., Sanchez,D.G., Buchieri,M.V., Olvera,L., Beassoni,P.R., Schweizer,H.P., Morett,E., Lisa,A.T.. Choline catabolism, sigma(54) factor and NtrC are required for the full expression of the Pseudomonas aeruginosa phosphorylcholine phosphatase gene. Microbiological Research, 166 (5), 380-390.
Open Access Revisión
114 - Collado-Vides,J., Salgado,H., Morett,E., Gama-Castro,S., Jimenez-Jacinto,V., Martinez-Flores,I., Medina-Rivera,A., Muniz-Rascado,L., Peralta-Gil,M., Santos-Zavaleta,A.. Bioinformatics resources for the study of gene regulation in bacteria. Journal of Bacteriology, 191 (1), 23-31.
Open Access Artículo
Open Access Artículo
Internacional
117 - Tapia,J.J., Morett,E., Vallejo,E.E.. A clustering genetic algorithm for genomic data mining. Foundations of Computational Intelligence . Studies in Computational Intelligence, 249-275, 4, Berlin, Heidelberg: Springer.
Memoria in extenso
118 - Tapia,J.J., Vallejo,E.E., Morett,E.. MOCEA: A multi-objective clustering evolutionary algorithm for inferring protein-protein functional interactions. Proceedings of the 11th Annual Genetic and Evolutionary Computation Conference, GECCO-2009. 1793-1794.
Open Access Artículo
119 - Gama-Castro,S., Jimenez-Jacinto,V., Peralta-Gil,M., Santos-Zavaleta,A., Penaloza-Spinola,M.I., Contreras-Moreira,B., Segura-Salazar,J., Muniz-Rascado,L., Martinez-Flores,I., Salgado,H., Bonavides-Martinez,C., Abreu-Goodger,C., Rodriguez-Penagos,C., Miranda-Rios,J., Morett,E., Merino,E., Huerta,A.M., Trevino-Quintanilla,L., Collado-Vides,J.. RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nucleic Acids Research, 36 (Database issue), D120-D124.
Artículo
Open Access Artículo
121 - Watanabe,R.L., Morett,E., Vallejo,E.E.. Inferring modules of functionally interacting proteins using the Bond Energy Algorithm. BMC Bioinformatics, 9 (1), 285.
Memoria in extenso
122 - Molina-Lozano,H., Vallejo-Clemente,E.E., Morett-Sanchez,J.E.. DNA sequence analysis using fuzzy grammars. IEEE International Conference on Fuzzy Systems. 1915-1921.
Open Access Artículo
123 - Dago,A.E., Wigneshweraraj,S.R., Buck,M., Morett,E.. A role for the conserved GAFTGA motif of AAA transcriptional activators in sensing promoter DNA conformation. Journal of Biological Chemistry, 282 (2), 1087-1097.
Artículo
124 - Hernandez-Urzua,E., Zamorano-Sanchez,D.S., Ponce-Coria,J., Morett,E., Grogan,S., Poole,R.K., Membrillo-Hernandez,J.. Multiple regulators of the Flavohaemoglobin (hmp) gene of Salmonella enterica serovar Typhimurium include RamA, a transcriptional regulator conferring the multidrug resistance phenotype. Archives of Microbiology, 187 (1), 67-77.
Memoria in extenso
125 - Martínez,M., Vallejo,E.E., Morett,E.. Ancestral DNA sequence reconstruction using recursive genetic algorithms. Lecture Notes in Computer Science, vol 4828 cap 4. 390-400.
Artículo; Actas Paper
126 - Aguilar-Diaz,H., Bobes,R.J., Carrero,J.C., Camacho-Carranza,R., Cervantes,C., Cevallos,M.A., Davila,G., Rodriguez-Dorantes,M., Escobedo,G., Fernandez,J.L., Fragoso,G., Gaytan,P., Garciarrubio,A., Gonzalez,V.M., Gonzalez,L., Jose,M.V., Jimenez,L., Laclette,J.P., Landa,A., Larralde,C., Morales-Montor,J., Morett,E., Ostoa-Saloma,P., Sciutto,E., Santamaria,R.I., Soberon,X., de la Torre P., Valdes,V., Yanez,J.. The genome project of Taenia solium. Parasitology International, 55 (Suppl), S127-S130.
Open Access Artículo
127 - Avonce,N., Mendoza-Vargas,A., Morett,E., Iturriaga,G.. Insights on the evolution of trehalose biosynthesis. BMC Evolutionary Biology, 6 (1), 109.
Open Access Artículo
128 - Huerta,A.M., Francino,M.P., Morett,E., Collado-Vides,J.. Selection for Unequal Densities of sigma(70) Promoter-Like Signals in Different Regions of Large Bacterial Genomes. PLoS Genetics, 2 (11), e185.
Memoria in extenso
129 - Fernandez,J.C., Vallejo,E.E., Morett,E.. Fuzzy C-means for inferring functional coupling of proteins from their phylogenetic profiles. Computational Intelligence and Bioinformatics and Computational Biology, 2006. CIBCB '06. 2006 IEEE Symposium on. 1-8.
Memoria in extenso
130 - Watanabe,R., Vallejo,E.E., Morett,E.. Inferring functional coupling of proteins using the Evolutionary Bond Energy Algorithm. Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB'06. 400-405.
Artículo
131 - Gaytan,P., Yanez,J., Grande,R., Morett,E., Soberon,X.. Improving random mutagenesis by purification of the oligonucleotide variants. Combinatorial Chemistry & High Throughput Screening, 8 (6), 537-544.
Artículo
135 - Morett,E., Korbel,J.O., Rajan,E., Saab-Rincon,G., Olvera,L., Olvera,M., Schmidt,S., Snel,B., Bork,P.. Systematic discovery of analogous enzymes in thiamin biosynthesis. Nature Biotechnology, 21 (7), 790-795.
Internacional
136 - Morett,E., Saab-Rincon,G., Merino,E., Bork,P., Rajan,E., Olvera,L., Olvera,M.. High rate of gene displacement in vitamin biosynthesis pathways. Bioinformatics and genomes: current perspectives. 69-79, Norfolk,U.K..
Open Access Artículo; Actas
137 - Morett,E., Korbel,J.O., Rajan,E., Saab-Rincon,G., Olvera,L., Olvera,M., Schmidt,S., Snel,B., Bork,P.. Discovery of Analogous Enzymes in Thiamin Biosynthesis by Anticorrelation. Genome Informatics, 13, 365-366.
Artículo
138 - Chaney,M., Grande,R., Wigneshweraraj,S.R., Cannon,W., Casaz,P., Gallegos,M.T., Schumacher,J., Jones,S., Elderkin,S., Dago,A.E., Morett,E., Buck,M.. Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes and Development, 15 (17), 2282-2294.
Nacional
139 - Morett,E.. Genetic regulation of nitrogen fixation: from ammonia ssimilation to protein evolution. Nitrogen Fixation Research Center XX Anniversary. 180-183.
Artículo
140 - Juarez,K., Flores,H., Davila,S., Olvera,L., Gonzalez,V., Morett,E.. Reciprocal domain evolution within a transactivator in a restricted sequence space. Proceedings of the National Academy of Sciences of the United States of America, 97 (7), 3314-3318.
Open Access Revisión
Artículo
Artículo
143 - Morett,E., Bork,P.. A novel transactivation domain in parkin. Trends in Biochemical Sciences, 24 (6), 229-231.
Open Access Artículo
Open Access Artículo
Open Access Artículo
Open Access Artículo
153 - Cannon,W.V., Kreutzer,R., Kent,H.M., Morett,E., Buck,M.. Activation of the Klebsiella pneumoniae nifU promoter: identification of multiple and overlapping upstream NifA binding sites. Nucleic Acids Research, 18 (7), 1693-1701. *
Artículo
154 - Morett,E., Kreutzer,R., Cannon,W., Buck,M.. The influence of the Klebsiella pneumoniae regulatory gene nifL upon the transcriptional activator protein NifA. Molecular Microbiology, 4 (8), 1253-1258. *
Artículo
Open Access Artículo
Open Access Artículo
158 - Morett,E., Buck,M.. NifA-dependent in vivo protection demonstrates that the upstream activator sequence of nif promoters is a protein binding site. Proceedings of the National Academy of Sciences of the United States of America, 85 (24), 9401-9405. *
Note
159 - Romero,D., Singleton,P.W., Segovia,L., Morett,E., Benbohlool,B., Palacios,R., Davila,G.. Effect of Naturally Occurring nif Reiterations on Symbiotic Effectiveness in Rhizobium phaseoli. Applied and Environmental Microbiology, 54 (3), 848-850. *
Open Access Note
161 - Calderon,J., Morett,E., Mora,J.. Omega-amidase pathway in the degradation of glutamine in Neurospora crassa. Journal of Bacteriology, 161 (2), 807-809. *
Artículo