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Dr. Adrian Ochoa Leyva
Investigador Titular B Tiempo Completo
Bioinformática aplicada a las ciencias ómicas
Estudios genómicos, bioquímicos de la interacción de la microbiota con distintos hospederos
Metagenómica ambiental
Número de registros: 7
- Activos
- Vencidos
- Impacto de la genética y el ambiente en la co-evolución del plasmidoma en la microbiota del camarón en méxico., DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2023 - 2025
- Descifrando la dinámica del genoma accesorio en el microbioma y su impacto en la salud del camarón cultivado en méxico, CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 2020 - 2025
- Seguimiento multianual de la dinámica del microbioma del camarón y su entorno en un sistema de producción acuícola, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2018 - 2020
- Manipulación del microbioma del camarón como una solución para enfermedades que afectan la producción nacional., DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2020 - 2022
- Estudio de la dinámica del microbioma asociado al cultivo de dos cepas de camarón y su entorno a través del tiempo, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2016 - 2018
- Análisis del metatranscriptoma intestinal en personas sanas y obesas de población mexicana infecciosas, CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 2015 - 2018
- Estudios de metagenomas y metatranscriptomas asociados a enfermedades infecciosas, PRESUPUESTO UNAM, 2015 - 2020
Nivel III del SNII
Nivel C del PRIDE
Nivel C del PRIDE
Posdoctoral, Posdoctorado, INMEGEN, 2013
Posdoctoral, Posdoctorado, Langebio-CINVESTAV, 2011
Doctorado, Ciencias Bioquímicas, Instituto de Biotecnología-UNAM (2011)
Maestría, Ciencias Bioquímicas, Instituto de Biotecnología-UNAM (2007)
Licenciatura, Licenciatura: Biólogo Experimental, Universidad Autónoma de Sinaloa (2005)
Reconocimiento Distinción Universidad Nacional para Jóvenes Académicos (RDUNJA), UNAM, 2019
Premio Carlos Casas Campillo 2018, SMBB, 2018
- Activos
- Graduados
-
Doctorado
-
M.C. Luigui Michel Gallardo Becerra
Caracterización metatranscripcional de la microbiota intestinal en población infantil mexicana con obesidad y síndrome metabólico
-
Licenciatura
-
Estancia Temporal
1 - Ochoa Romo, Juan Pablo (2021). Efecto en la composicion de la microbiota del camaron blanco del Pacifico (Litopenaeus vannamei) alimentado con dietas suplementadas con agavina en condiciones reales de cultivo.
Instituto de Biotecnologia,
Maestria en Ciencias Bioquimicas,
UNAM.
Asesor: Ochoa Leyva, Adrian
2 - Cervantes Echeverria, Melany Josheline (2021). Analisis del fagoma intestinal de ratones con obesidad y sindrome metabolico inoculados con particulas virales de ninos normopeso.
Instituto de Biotecnología,
Maestría en Ciencias Bioquímicas,
UNAM.
Asesor: Ochoa Leyva, Adrian
3 - Cornejo Granados, Maria Fernanda (2021). Estudio de la interaccion patogeno-hospedero en un modelo murino de tuberculosis pulmonar mediante el analisis del transcriptoma y el secretoma.
Instituto de Biotecnologia,
Doctora en Bioquimicas,
UNAM.
Asesor: Ochoa Leyva, Adrian
4 - Donjuan Guerrero, Edgar Axel (2021). Efecto del consumo de fructanos en la microbiota de Litopenaeus Vanammei bajo condiciones de cultivo comercial.
Instituto de Biotecnologia,
Maestría en Ciencias Bioquímicas,
UNAM.
Asesor: Ochoa Leyva, Adrian
5 - Bikel, Shirley (2021). El papel del viroma en el microbioma intestinal asociado a la obesidad con complicaciones metabólicas en población infantil mexicana.
Facultad de Química,
Doctorado en Investigacion Clinica Experimental en Salud,
UNAM.
Asesor: Ochoa Leyva, Adrian
6 - Jimenez Rico, Marco Antonio (2020). Efecto de los bacteriofagos sobre la dinamica de la microbiota intestinal de ratones con obesidad y alteraciones metabolicas.
Instituto de Biotecnologia,
Maestría en Ciencias Bioquímicas,
UNAM.
Asesor: Ochoa Leyva, Adrian
7 - Gallardo Becerra, Luigui Michel (2019). Caracterizacion metatranscripcional de la microbiota intestinal en poblacion infantil mexicana con obesidad y sindrome metabolico .
Instituto de Biotecnologia,
Maestria en Ciencias Bioquimicas,
UNAM.
Asesor: Ochoa Leyva, Adrian
8 - Rosas Muñoz, Isabel (2018). Análisis del microbioma de hepatopáncreas de camarones en cultivo (penaeus vannamei) sanos y enfermos .
Centro Universitario de Ciencias Biológicas y Agropecuarias,
Licenciado en Biología,
Universidad de Guadalajara.
*
Asesor: Ochoa Leyva, Adrian
9 - Gallardo Becerra, Luigui Michel (2018). Análisis de la microbiota relacionada con el camarón blanco (litopenaeus vannamei) : intestino.
Centro Universitario de Ciencias Biológicos y Agropecuarias,
Licenciado en Biología,
Universidad de Guadalajara.
*
Asesor: Ochoa Leyva, Adrian
10 - Bikel, Shirley (2014). Identificacion de genes candidato en mieloma multiple mediante enfoques de estructura-funcion de proteinas e integracion de omicas .
Maestra en Investigacion Clinica Experimental en Salud,
UNAM.
*
Asesor: Ochoa Leyva, Adrian
Total de publicaciones: 81
- Tipo
- Fecha
Revisión
11 - Gallardo-Becerra,L., Cervantes-Echeverria,M., Cornejo-Granados,F., Vazquez-Morado,L.E., Ochoa-Leyva,A. (2024). Perspectives in Searching Antimicrobial Peptides (AMPs) Produced by the Microbiota.
Microbial Ecology,
87 (1),
8.
Artículo
12 - Hoyos-Gonzalez,N., Ochoa-Leyva,A., Benitez-Cardoza,C.G., Brieba,L.G., Lukaszewicz,G., Trasvina-Arenas,C.H., Sotelo-Mundo,R.R. (2024). Identification of a cryptic functional apolipophorin-III domain within the Prominin-1 gene of Litopenaeus vannamei.
Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology,
270 (Feb-Mar),
110928.
Artículo
13 - Manzo,R., Gallardo-Becerra,L., Diaz de Leon-Guerrero,S., Villasenor,T., Cornejo-Granados,F., Salazar-Leon,J., Ochoa-Leyva,A., Pedraza-Alva,G., Perez-Martinez,L. (2024). Environmental Enrichment Prevents Gut Dysbiosis Progression and Enhances Glucose Metabolism in High-Fat Diet-Induced Obese Mice.
International Journal of Molecular Sciences,
25 (13),
6904.
Artículo
14 - Aguayo-Patron,S.V., Trujillo-Rivera,O.A., Cornejo-Granados,F., Ochoa-Leyva,A., Calderon de la Barca,A.M. (2023). HLA-Haplotypes Influence Microbiota Structure in Northwestern Mexican Schoolchildren Predisposed for Celiac Disease or Type 1 Diabetes.
Microorganisms,
11 (6),
1412.
Artículo
15 - Cervantes-Echeverria,M., Gallardo-Becerra,L., Cornejo-Granados,F., Ochoa-Leyva,A. (2023). The Two-Faced Role of crAssphage Subfamilies in Obesity and Metabolic Syndrome: Between Good and Evil.
Genes (Basel),
14 (1),
139.
Artículo
16 - Chino de la Cruz,C., Cornejo-Granados,F., Gallardo-Becerra,L., Rodriguez-Alegria,M.E., Ochoa-Leyva,A., Lopez-Munguia,A. (2023). Complete genome sequence and Characterization of a novel Enterococcus faecium with Probiotic Potential isolated from the Gut of Litopenaeus vannamei.
Microbial Genomics,
9 (3),
000938.
Artículo
17 - Jatuyosporn,T., Laohawutthichai,P., Ochoa-Romo,J.P., Gallardo-Becerra,L., Sanchez-Lopez,F., Tassanakajon,A., Ochoa-Leyva,A., Krusong,K. (2023). White spot syndrome virus impact on the expression of immune genes and gut microbiome of black tiger shrimp Penaeus monodon.
Scientific Reports,
13 (1),
996.
Articulo
18 - Murga-Garrido,S.M., Ulloa-Perez,E.J., Diaz-Benitez,C.E, Orbe-Orihuela,Y.C, Cornejo-Granados,F., Ochoa-Leyva,A, Sanchez-Flores,A, Cruz,M, Castaneda-Marquez,A.C, Plett-Torres,T, Burguete-Garcia,A.I., Lagunas-Martinez,A. (2023). Virulence Factors of the Gut Microbiome Are Associated with BMI and Metabolic Blood Parameters in Children with Obesity.
Microbiology Spectrum,
11 (2),
e0338222.
Artículo
19 - Arrieta,O., Molina-Romero,C., Cornejo-Granados,F., Marquina-Castillo,B., Aviles-Salas,A., Lopez-Leal,G., Cardona,A.F., Ortega-Gomez,A., Orozco-Morales,M., Ochoa-Leyva,A., Hernandez-Pando,R. (2022). Clinical and pathological characteristics associated with the presence of the IS6110 Mycobacterim tuberculosis transposon in neoplastic cells from non-small cell lung cancer patients.
Scientific Reports,
12 (1),
2210.
Artículo
20 - Bikel,S., Gallardo-Becerra,L., Cornejo-Granados,F., Ochoa-Leyva,A. (2022). Protocol for the isolation, sequencing, and analysis of the gut phageome from human fecal samples.
STAR Protocols,
3 (1),
101170.
Artículo
21 - Brassea-Estardante,H.A., Martinez-Cruz,O., Cardenas-Lopez,J.L., Garcia-Orozco,K.D., Ochoa-Leyva,A., Lopez-Zavala,A.A. (2022). Identification of arginine kinase as an allergen of brown crab, Callinectes bellicosus, and in silico analysis of IgE-binding epitopes.
Molecular Immunology,
143,
147-156.
Articulo
22 - Cerezo-Cortes,M.I., Rodriguez-Castillo,J.G., Mata-Espinosa,D.A., Bini,E.I., Barrios-Payan,J., Zatarain-Barron,Z.L., Anzola,J.M., Cornejo-Granados,F., Ochoa-Leyva,A., del Portillo,P., Murcia,M.I., Hernandez-Pando,R. (2022). Close Related Drug-Resistance Beijing Isolates of Mycobacterium tuberculosis Reveal a Different Transcriptomic Signature in a Murine Disease Progression Model.
International Journal of Molecular Sciences,
23 (9),
5157.
Artículo
23 - Medina-Salazar,S.A., Cornejo-Granados,F., Equihua-Medina,E., Ochoa-Leyva,A., Vallejo-Perez,M.R., Vega-Manriquez,D.X., Jarquin-Galvez,R., Castro-Rivera,R., Aguilar-Benitez,G., Lara-Avila,J.P. (2022). Genome analysis of Pseudomonas sp. 14A reveals metabolic capabilities to support epiphytic behavior.
World Journal of Microbiology & Biotechnology,
38 (3),
49.
Artículo
24 - Murga-Garrido,S.M., Orbe-Orihuela,Y.C., Diaz-Benitez,C.E., Castaneda-Marquez,A.C., Cornejo-Granados,F., Ochoa-Leyva,A., Sanchez-Flores,A., Cruz,M., Burguete-Garcia,A.I., Lagunas-Martinez,A. (2022). Alterations of the Gut Microbiome Associated to Methane Metabolism in Mexican Children with Obesity.
Children,
9 (2),
148.
Artículo
25 - Ochoa-Romo,J.P., Cornejo-Granados,F., Lopez-Zavala,A.A., Viana,M.T., Sanchez,F., Gallardo-Becerra,L., Luque-Villegas,M., Valdez-Lopez,Y., Sotelo-Mundo,R.R., Cota-Huizar,A., Lopez-Munguia,A., Ochoa-Leyva,A. (2022). Agavin induces beneficial microbes in the shrimp microbiota under farming conditions.
Scientific Reports,
12 (1),
6392.
Artículo
26 - Orbe-Orihuela,Y.C., Godoy-Lozano,E.E., Lagunas-Martinez,A, Castaneda-Marquez,A.C, Murga-Garrido,S, Diaz-Benitez,C.E, Ochoa-Leyva,A., Cornejo-Granados,F, Cruz,M, Estrada,K, Bermudez-Morales,V.H., Sanchez-Flores,A., Burguete-Garcia,A.I (2022). Association of Gut Microbiota with Dietary-dependent Childhood Obesity.
Archives of Medical Research,
53 (4),
407-415.
Artículo
27 - Palomino-Hermosillo,Y.A., Berumen-Varela,G., Ochoa-Jimenez,V.A., Balois-Morales,R., Jimenez-Zurita,J.O., Bautista-Rosales,P.U., Martinez-Gonzalez,M.E., Lopez-Guzman,G.G., Cortes-Cruz,M.A., Guzman,L.F., Cornejo-Granados,F., Gallardo-Becerra,L., Ochoa-Leyva,A., Alia-Tejacal,I. (2022). Transcriptome Analysis of Soursop (Annona muricata L.) Fruit under Postharvest Storage Identifies Genes Families Involved in Ripening.
Plants (Basel),
11 (14),
1798.
Artículo
28 - Vazquez-Armenta,F.J., Valdez-Olmos,U.F., Arvizu-Flores,A.A., Ayala-Zavala,J.F., Ochoa-Leyva,A., Lopez-Zavala,A.A. (2022). Metal Ions and Chemical Modification Reagents Inhibit the Enzymatic Activity of Lecithin-Dependent Hemolysin from Vibrio parahaemolyticus.
Toxins (Basel),
14 (9),
609.
Artículo
29 - Vazquez-Velez,E., Martinez,H., Kumar Kesarla,M., Ochoa-Leyva,A. (2022). Studies on the effect of long-chain and head groups of nonionic surfactants synthesized from palm and coconut oil on the formation of silver nanoparticles.
Journal of Surfactants and Detergents,
25 (3),
413-426.
Artículo
30 - Bikel,S., Lopez-Leal,G., Cornejo-Granados,F., Gallardo-Becerra,L., Garcia-Lopez,R., Sanchez,F., Equihua-Medina,E., Ochoa-Romo,J.P., Lopez-Contreras,B.E., Canizales-Quinteros,S., Hernandez-Reyna,A., Mendoza-Vargas,A., Ochoa-Leyva,A. (2021). Gut dsDNA virome shows diversity and richness alterations associated with childhood obesity and metabolic syndrome.
iScience,
24 (8),
102900.
Artículo
31 - Cerezo-Cortes,M.I., Rodriguez-Castillo,J.G., Lopez-Leal,G., Mata-Espinosa,D.A., Bini,E.I., Marquina-Castillo,B.N., Barrios-Payan,J., Zatarain-Barron,Z.L., Bobadilla del Valle,M., Cornejo-Granados,F., Ochoa-Leyva,A., Murcia,M.I., Hernandez-Pando,R. (2021). Profiling the immune response to Mycobacterium tuberculosis Beijing family infection: a perspective from the transcriptome.
Virulence,
12 (1),
1689-1704.
Artículo
32 - Cornejo-Granados,F., Kohl,T.A., Sotomayor,F.V., Andres,S., Hernandez-Pando,R., Hurtado-Ramirez,J.M., Utpatel,C., Niemann,S., Maurer,F.P., Ochoa-Leyva,A. (2021). Secretome characterization of clinical isolates from the Mycobacterium abscessus complex provides insight into antigenic differences.
BMC Genomics,
22 (1),
385.
Artículo
33 - Cornejo-Granados,F., Lopez-Leal,G., Mata-Espinosa,D.A., Barrios-Payan,J., Marquina-Castillo,B., Equihua-Medina,E., Zatarain-Barron,Z.L., Molina-Romero,C., Hernandez-Pando,R., Ochoa-Leyva,A. (2021). Targeted rna-seq reveals the m. Tuberculosis transcriptome from an in vivo infection model.
Biology,
10 (9),
848.
Artículo
34 - Garcia-Lopez,R., Cornejo-Granados,F., Lopez-Zavala,A.A., Cota-Huizar,A., Sotelo-Mundo,R.R., Gomez-Gil,B., Ochoa-Leyva,A. (2021). OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters.
Genes (Basel),
12 (4),
564.
Artículo
35 - Gomez-Fuentes,S., Hernandez-de la Fuente,S., Morales-Ruiz,V., Lopez-Recinos,D., Guevara-Salinas,A., Parada-Colin,M.C., Espitia,C., Ochoa-Leyva,A., Sanchez,F., Villalobos,N., Arce-Sillas,A., Hernandez,M., Mora,S.I., Fragoso,G., Sciutto,E., Adalid-Peralta,L. (2021). A novel, sequencing-free strategy for the functional characterization of Taenia solium proteomic fingerprint.
PLoS Neglected Tropical Diseases,
15 (2),
e0009104.
Artículo
36 - Jatuyosporn,T., Laohawutthichai,P., Supungul,P., Sotelo-Mundo,R.R., Ochoa-Leyva,A., Tassanakajon,A., Krusong,K. (2021). PmAP2- B depletion enhanced activation of the Toll signaling pathway during yellow head virus infection in the black tiger shrimp Penaeus monodon.
Scientific Reports,
11 (1),
10534.
Artículo
37 - Valenzuela-Chavira,I., Corona-Martinez,D.O., Garcia-Orozco,K.D., Beltran-Torres,M., Sanchez-Lopez,F., Arvizu-Flores,A.A., Sugich-Miranda,R., Lopez-Zavala,A.A., Robles-Zepeda,R.E., Islas-Osuna,M.A., Ochoa-Leyva,A., Toney,M.D., Serrano-Posada,H., Sotelo-Mundo,R.R. (2021). A Novel Glutathione S-Transferase Gtt2 Class (VpGSTT2) Is Found in the Genome of the AHPND/EMS Vibrio parahaemolyticus Shrimp Pathogen.
Toxins,
13 (9),
664.
Artículo
38 - Vazquez-Morado,L.E., Robles-Zepeda,R.E., Ochoa-Leyva,A., Arvizu-Flores,A.A., Garibay-Escobar,A., Castillo-Yanez,F., Lopez-Zavala,A.A. (2021). Biochemical characterization and inhibition of thermolabile hemolysin from Vibrio parahaemolyticus by phenolic compounds.
PeerJ,
9.
Artículo
39 - Calderon de la Barca,A.M, Castillo-Fimbres,R.S., Mejia-Leon,M.E., Quihui-Cota,L., Ochoa-Leyva,A., Aguayo-Patron,S.V. (2020). Enteric parasitic infection disturbs bacterial structure in Mexican children with autoantibodies for type 1 diabetes and/or celiac disease.
Gut Pathogens,
12,
37,
37.
Artículo
40 - Fuentes-Quesada,J.P., Cornejo-Granados,F., Mata-Sotres,J.A., Ochoa-Romo,J.P., Rombenso,A.N., Guerrero-Renteria,Y., Lazo,J.P., Pohlenz,C., Ochoa-Leyva,A., Viana,M.T. (2020). Prebiotic agavin in juvenile totoaba, Totoaba macdonaldi diets, to relieve soybean meal-induced enteritis: Growth performance, gut histology and microbiota.
Aquaculture Nutrition,
26 (6),
2115-2134.
Artículo
41 - Gallardo-Becerra,L., Cornejo-Granados,F., Garcia-Lopez,R., Valdez-Lara,A., Bikel,S., Canizales-Quinteros,S., Lopez-Contreras,B.E., Mendoza-Vargas,A., Nielsen,H., Ochoa-Leyva,A. (2020). Metatranscriptomic analysis to define the Secrebiome, and 16S rRNA profiling of the gut microbiome in obesity and metabolic syndrome of Mexican children.
Microbial Cell Factories,
19 (1),
61.
Artículo
42 - Garcia-Lopez,R., Cornejo-Granados,F., Lopez-Zavala,A.A., Sanchez-Lopez,F., Cota-Huizar,A., Sotelo-Mundo,R.R., Guerrero,A., Mendoza-Vargas,A., Gomez-Gil,B., Ochoa-Leyva,A. (2020). Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota.
Microorganisms,
8 (1).
Artículo
43 - Zatarain-Barron,Z.L., Ramos-Espinosa,O., Marquina-Castillo,B., Barrios-Payan,J., Cornejo-Granados,F., Maya-Lucas,O., Lopez-Leal,G., Molina-Romero,C., Anthony,R.M., Ochoa-Leyva,A., De La Rosa-Velazquez IA, Rebollar-Vega,R.G., Warren,R.M., Mata-Espinosa,D.A., Hernandez-Pando,R., van,Soolingen D. (2020). Evidence for the Effect of Vaccination on Host-Pathogen Interactions in a Murine Model of Pulmonary Tuberculosis by Mycobacterium tuberculosis.
Frontiers in Immunology,
11,
930.
Artículo
44 - Astudillo-Melgar,F., Ochoa-Leyva,A., Utrilla,J., Huerta-Beristain,G. (2019). Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico.
Frontiers in Microbiology,
10,
531 [Publicado anteriormente en repositorio bioRxiv].
Artículo
45 - Cornejo-Granados,F., Hurtado-Ramirez,J.M., Hernandez-Pando,R., Ochoa-Leyva,A. (2019). Secret-AAR: A web server to assess the antigenic density of proteins and homology search against bacterial and parasite secretome proteins.
Genomics,
111 (6),
1514-1516.
Artículo
46 - Dautt-Castro,M., Lopez-Virgen,A.G., Ochoa-Leyva,A., Contreras-Vergara,C.A., Sortillon-Sortillon,A.P., Martinez-Tellez,M.A., Gonzalez-Aguilar,G.A., Casas-Flores,J.S., Sanudo-Barajas,A., Kuhn,D.N., Islas-Osuna,M.A. (2019). Genome-Wide Identification of Mango (Mangifera indica L.) Polygalacturonases: Expression Analysis of Family Members and Total Enzyme Activity During Fruit Ripening.
Frontiers in Plant Science,
10,
969.
Artículo
47 - Jatuyosporn,T., Laohawutthichai,P., Supungul,P., Sotelo-Mundo,R.R., Ochoa-Leyva,A., Tassanakajon,A., Krusong,K. (2019). Role of Clathrin Assembly Protein-2 Beta Subunit during White Spot Syndrome Virus Infection in Black Tiger Shrimp Penaeus monodon.
Scientific Reports,
9 (1),
13489.
Artículo
48 - Ruiz-Zamora,R.A., Guillaume,S., Al-Hilaly,Y.K., Al-Garawi,Z., Rodriguez-Alvarez,F.J., Zavala-Padilla,G., Perez-Carreon,J.I., Rodriguez-Ambriz,S.L., Herrera,G.A., Becerril-Lujan,B., Ochoa-Leyva,A., Melendez-Zajgla,J., Serpell,L., Del Pozo-Yauner,L. (2019). The CDR1 and Other Regions of Immunoglobulin Light Chains are Hot Spots for Amyloid Aggregation.
Scientific Reports,
9 (1),
3123.
Artículo
49 - Castro-Torres,E., Jimenez-Sandoval,P., Fernandez-de,Gortari E., Lopez-Castillo,M., Baruch-Torres,N., Lopez-Hidalgo,M., Peralta-Castro,A., Diaz-Quezada,C., Sotelo-Mundo,R.R., Benitez-Cardoza,C.G., Espinoza-Fonseca,L.M., Ochoa-Leyva,A., Brieba,L.G. (2018). Structural Basis for the Limited Response to Oxidative and Thiol-Conjugating Agents by Triosephosphate Isomerase From the Photosynthetic Bacteria Synechocystis.
Frontiers in Molecular Biosciences,
5,
103.
Artículo
50 - Cervantes-Echeverria,M., Equihua-Medina,E., Cornejo-Granados,F., Hernandez-Reyna,A., Sanchez,F., Lopez-Contreras,B.E., Canizales-Quinteros,S., Ochoa-Leyva,A. (2018). Whole-genome of Mexican-crAssphage isolated from the human gut microbiome.
BMC Research Notes,
11 (1),
902.
Artículo
Artículo
52 - Dautt-Castro, M., Ochoa-Leyva, A., Contreras-Vergara, C.A., Muhlia-Almazan, A., Rivera-Dominguez, M., Casas-Flores, S., Martinez-Tellez, M.A., Sanudo-Barajas, A., Osuna-Enciso, T., Baez-Sanudo, M.A., Quiroz-Figueroa, F.R., Kuhn, D.N., Islas-Osuna, M.A. (2018). Mesocarp RNA-Seq analysis of mango (Mangifera indica L.) identify quarantine postharvest treatment effects on gene expression.
Scientia Horticulturae,
227,
146-153.
Artículo
53 - Garcia, C.F., Pedrini, N., Sanchez-Paz, A., Reyna-Blanco, C.S., Lavarias, S., Muhlia-Almazan, A., Fernandez-Gimenez, A., Laino, A., de-la-Re-Vega, E., Lukaszewicz, G., Lopez-Zavala, A.A., Brieba, L.G., Criscitello, M.F., Carrasco-Miranda, J.S., Garcia-Orozco, K.D., Ochoa-Leyva, A., Rudino-Pinera, E., Sanchez-Flores, A., Sotelo-Mundo, R.R. (2018). De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response.
Marine Genomics,
37,
74-81.
Artículo
54 - Gonzalez-Felix, M.L., Gatlin, D.M., Urquidez-Bejarano, P., de la Ree-Rodriguez, C., Duarte-Rodriguez, L., Sanchez, F., Casas-Reyes, A., Yamamoto, F.Y., Ochoa-Leyva, A., Perez-Velazquez, M. (2018). Effects of commercial dietary prebiotic and probiotic supplements on growth, innate immune responses, and intestinal microbiota and histology of Totoaba macdonaldi.
Aquaculture,
491,
239-251.
Artículo
55 - Lopez-Contreras, B.E., Moran-Ramos, S., Villarruel-Vazquez, R., Macias-Kauffer, L., Villamil-Ramirez, H., Leon-Mimila, P., Vega-Badillo, J., Sanchez-Munoz, F., Llanos-Moreno, L.E., Canizalez-Roman, A., del Rio-Navarro, B., Ibarra-Gonzalez, I., Vela-Amieva, M., Villarreal-Molina, T., Ochoa-Leyva, A., Aguilar-Salinas, C.A., Canizales-Quinteros, S. (2018). Composition of gut microbiota in obese and normal-weight Mexican school-age children and its association with metabolic traits.
Pediatric Obesity,
13 (6),
381-388.
Artículo
56 - Lopez-Leal,G., Cornejo-Granados,F., Hurtado-Ramirez,J.M., Mendoza-Vargas,A., Ochoa-Leyva,A. (2018). Functional and taxonomic classification of a greenhouse water drain metagenome.
Standards in Genomic Sciences,
13 (1),
20.
Artículo
57 - Lopez-Zavala, A.A., Guevara-Hernandez, E., Vazquez-Lujan, L.H., Sanchez-Paz, A., Garcia-Orozco, K.D., Contreras-Vergara, C.A., Lopez-Leal, G., Arvizu-Flores, A.A., Ochoa-Leyva, A., Sotelo-Mundo, R.R. (2018). A novel thymidylate synthase from the Vibrionales, Alteromonadales, Aeromonadales, and Pasteurellales (VAAP) clade with altered nucleotide and folate binding sites.
PeerJ,
6,
e5023.
Artículo
58 - Bikel, S., Jacobo-Albavera, L., Sanchez-Munoz, F., Cornejo-Granados, F., Canizales-Quinteros, S., Soberon, X., Sotelo-Mundo, R.R., Del Rio-Navarro, B.E., Mendoza-Vargas, A., Sanchez, F., Ochoa-Leyva, A. (2017). A novel approach for human whole transcriptome analysis based on absolute gene expression of microarray data.
PeerJ,
5,
e4133.
Artículo
59 - Bobes, R.J., Navarrete-Perea, J., Ochoa-Leyva, A., Anaya, V.H., Hernandez, M., Cervantes-Torres, J., Estrada, K., Sanchez-Lopez, F., Soberon, X., Rosas, G., Maroni-Nunes C., Garcia-Varela, M., Sotelo-Mundo, R.R., Lopez-Zavala, A.A., Gevorkian, G., Acero, G., Laclette, J.P., Fragoso, G., Sciutto, E. (2017). Experimental and theoretical approaches to investigate the immunogenicity of Taenia solium-derived KE7 antigen.
Infection and Immunity,
85,
e00395-17.
Artículo
60 - Cornejo-Granados, F., Zatarain-Barron, Z.L., Cantu-Robles, V.A., Mendoza-Vargas, A., Molina-Romero, C., Sanchez, F., Del Pozo-Yauner, L., Hernandez-Pando, R., Ochoa-Leyva, A. (2017). Secretome Prediction of Two M. tuberculosis Clinical Isolates Reveals Their High Antigenic Density and Potential Drug Targets.
Frontiers in Microbiology,
8,
128.
Artículo
61 - Cornejo-Granados, F., Lopez-Zavala, A.A., Gallardo-Becerra, L., Mendoza-Vargas, A., Sanchez, F., Vichido, R., Brieba, L.G., Viana, M.T., Sotelo-Mundo, R.R., Ochoa-Leyva, A. (2017). Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions.
Scientific Reports,
7 (1),
11783.
Artículo
62 - Romero-Hidalgo, S., Ochoa-Leyva, A., Garciarrubio, A., Acuna-Alonzo, V., Antunez-Arguelles, E., Balcazar-Quintero, M., Barquera-Lozano, R., Carnevale, A., Cornejo-Granados, F., Fernandez-Lopez, J.C., Garcia-Herrera, R., Garcia-Ortiz, H., Granados-Silvestre, A., Granados, J., Guerrero-Romero, F., Hernandez-Lemus, E., Leon-Mimila, P., Macin-Perez, G., Martinez-Hernandez, A., Menjivar, M., Morett, E., Orozco, L., Ortiz-Lopez, G., Perez-Villatoro, F., Rivera-Morales, J., Riveros-McKay, F., Villalobos-Comparan, M., Villamil-Ramirez, H., Villarreal-Molina, T., Canizales-Quinteros, S., Soberon, X. (2017). Demographic history and biologically relevant genetic variation of Native Mexicans inferred from whole-genome sequencing.
Nature Communications,
8 (1),
1005.
Artículo
63 - Lopez-Zavala,A.A., Carrasco-Miranda,J.S., Ramirez-Aguirre,C.D., Lopez-Hidalgo,M., Benitez-Cardoza,C.G., Ochoa-Leyva,A., Cardona-Felix,C.S., Diaz-Quezada,C., Rudino-Pinera,E., Sotelo-Mundo,R.R., Brieba,L.G. (2016). Structural insights from a novel invertebrate triosephosphate isomerase from Litopenaeus vannamei.
Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics,
1864 (12),
1696-1706.
Revisión
64 - Bikel,S., Valdez-Lara,A., Cornejo-Granados,F., Rico,K., Canizales-Quinteros,S., Soberon,X., Del Pozo-Yauner,L., Ochoa-Leyva,A. (2015). Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome.
Computational and Structural Biotechnology Journal,
13,
390-401.
Artículo
65 - Dautt-Castro,M., Ochoa-Leyva,A., Contreras-Vergara,C.A., Pacheco-Sanchez,M.A., Casas-Flores,S., Sanchez-Flores,A., Kuhn,D.N., Islas-Osuna,M.A. (2015). Mango (Mangifera indica L.) cv. Kent fruit mesocarp de novo transcriptome assembly identifies gene families important for ripening.
Frontiers in Plant Science,
6.
Artículo
66 - Gomez,S., Adalid-Peralta,L., Palafox-Fonseca,H., Cantu-Robles,V.A., Soberon,X., Sciutto,E., Fragoso,G., Bobes,R.J., Laclette,J.P., Yauner,L.D., Ochoa-Leyva,A. (2015). Genome analysis of Excretory/Secretory proteins in Taenia solium reveals their Abundance of Antigenic Regions (AAR).
Scientific Reports,
5,
9683 [erratum en vol 5 (12385) ].
Artículo
67 - Del Pozo-Yauner,L., Wall,J.S., Gonzalez-Andrade,M., Sanchez-Lopez,R., Rodriguez-Ambriz,S.L., Perez-Carreon,J.I., Ochoa-Leyva,A., Fernandez-Velasco,D.A. (2014). The N-terminal strand modulates immunoglobulin light chain fibrillogenesis.
Biochemical and Biophysical Research Communications,
443 (2),
495-499.
Artículo
68 - Ghaffari,N., Sanchez-Flores,A., Doan,R., Garcia-Orozco,K.D., Chen,P.L., Ochoa-Leyva,A., Lopez-Zavala,A.A., Carrasco,J.S., Hong,C., Brieba,L.G., Rudino-Pinera,E., Blood,P.D., Sawyer,J.E., Johnson,C.D., Dindot,S.V., Sotelo-Mundo,R.R., Criscitiello,M.F. (2014). Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture.
Scientific Reports,
4,
7081.
Artículo
69 - Gomez-Jimenez,S., Noriega-Orozco,L., Sotelo-Mundo,R.R., Cantu-Robles,V.A., Cobian-Guemes,A.G., Cota-Verdugo,R.G., Gamez-Alejo,L.A., Del Pozo-Yauner,L., Guevara-Hernandez,E., Garcia-Orozco,K.D., Lopez-Zavala,A.A., Ochoa-Leyva,A. (2014). High-Quality Draft Genomes of Two Vibrio parahaemolyticus Strains Aid in Understanding Acute Hepatopancreatic Necrosis Disease of Cultured Shrimps in Mexico.
Genome Announcements,
2 (4).
*
Artículo
70 - Lara-Gonzalez,S., Estrella-Hernandez,P., Ochoa-Leyva,A., Portillo-Tellez,M.C., Caro-Gomez,L.A., Figueroa-Angulo,E.E., Salgado-Lugo,H., Miranda-Ozuna,J.F., Ortega-Lopez,J., Arroyo,R., Brieba,L.G., Benitez-Cardoza,C.G. (2014). Structural and thermodynamic folding characterization of triosephosphate isomerases from Trichomonas vaginalis reveals the role of destabilizing mutations following gene duplication.
Proteins: Structure, Function and Bioinformatics,
82 (1),
22-33.
*
Artículo
71 - Ochoa-Leyva,A., Montero-Moran,G., Saab-Rincon,G., Brieba,L.G., Soberon,X. (2013). Alternative Splice Variants in TIM Barrel Proteins from Human Genome Correlate with the Structural and Evolutionary Modularity of this Versatile Protein Fold.
PLoS ONE,
8 (8),
e70582.
Artículo
72 - Tsai,I.J., Zarowiecki,M., Holroyd,N., Garciarrubio,A., Sanchez-Flores,A., Brooks,K.L., Tracey,A., Bobes,R.J., Fragoso,G., Sciutto,E., Aslett,M., Beasley,H., Bennett,H.M., Cai,Jianping, Camicia,F., Clark,R., Cucher,M., De Silva,N., Day,T.A., Deplazes,P., Estrada,K., Fernandez,C., Holland,P.W.H., Hou,Junling, Hu,Songnian, Huckvale,Thomas, Hung,S.S., Kamenetzky,L., Keane,J.A., Kiss,F., Koziol,U., Lambert,O., Liu,K., Luo,Xuenong, Luo,Yingfeng, Macchiaroli,N., Nichol,S., Paps,Jordi, Parkinson,J., Pouchkina-Stantcheva,N., Riddiford,N., Rosenzvit,M., Salinas,G., Wasmuth,James D., Zamanian,M., Zheng,Yadong, Cai,Xuepeng, Soberon,X., Olson,P.D., Laclette,J.P., Brehm,Klaus, Berriman,M., Ochoa-Leyva,A. (2013). The genomes of four tapeworm species reveal adaptations to parasitism.
Nature,
496 (7443),
57-63.
Artículo
73 - Figueroa-Angulo,E.E., Estrella-Hernandez,P., Salgado-Lugo,H., Ochoa-Leyva,A., Gomez-Puyou,A., Campos,S.S., Montero-Moran,G., Ortega-Lopez,J., Saab-Rincon,G., Arroyo,R., Benitez-Cardoza,C.G., Brieba,L.G. (2012). Cellular and biochemical characterization of two closely related triosephosphate isomerases from Trichomonas vaginalis.
Parasitology,
139 (13),
1729-1738.
Artículo
74 - Ochoa-Leyva,A., Barona-Gomez,F., Saab-Rincon,G., Verdel-Aranda,K., Sanchez,F., Soberon,X. (2011). Exploring the Structure-Function Loop Adaptability of a (beta/alpha)(8)-Barrel Enzyme through Loop Swapping and Hinge Variability.
Journal of Molecular Biology,
411 (1),
143-157.
Artículo
75 - Ochoa-Leyva,A., Soberon,X., Sanchez,F., Arguello,M., Montero-Moran,G., Saab-Rincon,G. (2009). Protein design through systematic catalytic loop exchange (SCLE) in the (beta/alpha)(8)-fold.
Journal of Molecular Biology,
387 (4),
949-964.
Artículo
76 - Wright,H., Noda-Garcia,L., Ochoa-Leyva,A., Hodgson,D.A., Fulop,V., Barona-Gomez,F. (2008). The structure/function relationship of a dual-substrate (betaalpha)(8)-isomerase.
Biochemical and Biophysical Research Communications,
365 (1),
16-21.
Internacional
77 - Pozo-Yauner,L., Becerril,B., Ochoa-Leyva,A., Rodriguez-Ambriz,S.L., Perez-Carrion,J.I., Zavala-Padilla,G., Sanchez-Lopez,R., Fernandez-Velasco,D.A. (2015). The Structural Determinants of the Immunoglobulin Light Chain Amyloid Aggregation. Physical Biology of Proteins and Peptides: Theory, Experiment, and Simulation.
1-28,
Cham.
Internacional
78 - Barona-Gomez,F., Ochoa-Leyva,A., Soberon,X. (2007). Advances and perspectives in protein engineering: from natural history to directed evolution of enzymes. Advances in Protein Physical Chemistry.
407-438,
Kerala: Research Signpost.
Preprint
79 - Cervantes-Echeverria,M.J., Jimenez-Rico,M.A., Manzo,R., Hernandez-Reyna,A., Cornejo-Granados,F., Sanchez-Lopez,F., Salazar-Leon,J., Pedraza-Alva,G., Perez-Martinez,L., Ochoa-Leyva,A. (2024). Fecal Virome Transplantation (FVT) from healthy humans remodels the gut bacteriome and virome and reduces metabolic syndrome in mice.
bioRxiv,
Preprint posted February 18.
Nacional divulgacion
80 - Cornejo-Granados,F., Ochoa-Leyva,A. (2023). El uso de la ingeniería gen?tica en el diseño y mejoramiento de la microbiota intestinal.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
35.
Preprint
81 - Vazquez-Armenta,F.J., Aros-Corrales,M.O., Alvarez-Ainza,M.L., Bernal-Mercado,A.T., Ayala-Zavala,J.F., Ochoa-Leyva,A., Lopez-Zavala,A.A. (2023). Antibacterial and anti-virulence potential of plant phenolic compounds against Vibrio parahaemolyticus.
F1000Research,
12,
1256.
Protocol not indexed
Preprint
83 - Cervantes-Echeverria,M., Gallardo-Becerra,L., Cornejo-Granados,F., Ochoa-Leyva,A. (2022). A loss of crAssphage stability in the human gut virome is associated with obesity and metabolic syndrome.
bioRxiv,
Preprint posted June 17.
Preprint
84 - Bikel,S., Lopez-Leal,G., Cornejo-Granados,F., Gallardo-Becerra,L., Sanchez,F., Equihua-Medina,E., Ochoa-Romo,J.P., Lopez-Contreras,B.E., Canizales-Quinteros,S., Ochoa-Leyva,A. (2020). Gut Phageome Analysis Reveals Disease-Specific Hallmarks in Childhood Obesity.
bioRxiv,
Preprint posted July 30.
Preprint
85 - Cornejo-Granados,F., Kohl,T.A., Vasquez-Sotomayor,F., Andres,S., Hernandez-Pando,R., Hurtado-Ramirez,J.M., Utpatel,C., Niemann,S., Maurer,F.P., Ochoa-Leyva,A. (2020). In silico secretome characterization of clinical Mycobacterium abscessus isolates provides insights into antigenic differences.
bioRxiv,
Preprint posted October 22, 2020.
Editorial Material, Meeting Report
86 - Cornejo-Granados,F., Calderon de la Barca,A.M., Torres,N., Martinez-Romero,E., Torres,J., Lopez-Vidal,Y., Soberon,X., Partida-Martinez,L.P., Pinto-Cardoso,S., Alcaraz,L.D., Pardo-Lopez,L., Canizales-Quinteros,S., Puente,J.L., Ochoa-Leyva,A. (2019). Microbiome-MX 2018: Microbiota and Microbiome opportunities in Mexico, a megadiverse country.
Research in Microbiology,
170 (4-5),
235-241.
data publication
87 - Fox-Uribe,L.Y., Hernandez-Paredes,J., Soberanes,Y., Valenzuela-Chavira,I., Garcia-Orozco,K.D., Ochoa-Leyva,A., Ochoa-Lara,K., Navarro,R.E., Sotelo-Mundo,R.R. (2019). d-Glutamic acid hydrochloride.
IUCrData,
4 (4),
x190458.
Preprint
88 - Astudillo-Melgar,F., Ochoa-Leyva,A., Utrilla,J., Huerta-Beristain,G. (2018). Bacterial diversity and population dynamics during the fermentation of palm wine from Guerrero Mexico.
bioRxiv,
preprint posted November 29, 2018.
Divulgación
89 - Bikel, S., Ochoa-Leyva, A. (2018). La microbiota humana, un mundo microscópico apasionante de explorar.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
13,
30-32.
90 - Ochoa Leyva, Adrian (2011). Explorando la relacion estructurafuncion de las asas SS/a de un barril (SS/a)8 : implicaciones para el diseno de nuevas funciones enzimaticas .
Instituto de Biotecnologia,
Doctorado en Ciencias Bioquimicas,
UNAM.
91 - Ochoa Leyva, Adrian (2008). Diseno de proteinas a traves de intercambio de asas cataliticas en barriles TIM.
Instituto de Biotecnologia,
Maestria en Ciencias Bioquimicas,
UNAM.
Asesor: Saab Rincon, Gloria
Revisión
92 - Gallardo-Becerra,L., Cervantes-Echeverria,M., Cornejo-Granados,F., Vazquez-Morado,L.E., Ochoa-Leyva,A.. Perspectives in Searching Antimicrobial Peptides (AMPs) Produced by the Microbiota.
Microbial Ecology,
87 (1),
8.
Artículo
93 - Hoyos-Gonzalez,N., Ochoa-Leyva,A., Benitez-Cardoza,C.G., Brieba,L.G., Lukaszewicz,G., Trasvina-Arenas,C.H., Sotelo-Mundo,R.R.. Identification of a cryptic functional apolipophorin-III domain within the Prominin-1 gene of Litopenaeus vannamei.
Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology,
270 (Feb-Mar),
110928.
Artículo
94 - Manzo,R., Gallardo-Becerra,L., Diaz de Leon-Guerrero,S., Villasenor,T., Cornejo-Granados,F., Salazar-Leon,J., Ochoa-Leyva,A., Pedraza-Alva,G., Perez-Martinez,L.. Environmental Enrichment Prevents Gut Dysbiosis Progression and Enhances Glucose Metabolism in High-Fat Diet-Induced Obese Mice.
International Journal of Molecular Sciences,
25 (13),
6904.
Preprint
95 - Cervantes-Echeverria,M.J., Jimenez-Rico,M.A., Manzo,R., Hernandez-Reyna,A., Cornejo-Granados,F., Sanchez-Lopez,F., Salazar-Leon,J., Pedraza-Alva,G., Perez-Martinez,L., Ochoa-Leyva,A.. Fecal Virome Transplantation (FVT) from healthy humans remodels the gut bacteriome and virome and reduces metabolic syndrome in mice.
bioRxiv,
Preprint posted February 18.
Artículo
96 - Aguayo-Patron,S.V., Trujillo-Rivera,O.A., Cornejo-Granados,F., Ochoa-Leyva,A., Calderon de la Barca,A.M.. HLA-Haplotypes Influence Microbiota Structure in Northwestern Mexican Schoolchildren Predisposed for Celiac Disease or Type 1 Diabetes.
Microorganisms,
11 (6),
1412.
Artículo
97 - Cervantes-Echeverria,M., Gallardo-Becerra,L., Cornejo-Granados,F., Ochoa-Leyva,A.. The Two-Faced Role of crAssphage Subfamilies in Obesity and Metabolic Syndrome: Between Good and Evil.
Genes (Basel),
14 (1),
139.
Artículo
98 - Chino de la Cruz,C., Cornejo-Granados,F., Gallardo-Becerra,L., Rodriguez-Alegria,M.E., Ochoa-Leyva,A., Lopez-Munguia,A.. Complete genome sequence and Characterization of a novel Enterococcus faecium with Probiotic Potential isolated from the Gut of Litopenaeus vannamei.
Microbial Genomics,
9 (3),
000938.
Artículo
99 - Jatuyosporn,T., Laohawutthichai,P., Ochoa-Romo,J.P., Gallardo-Becerra,L., Sanchez-Lopez,F., Tassanakajon,A., Ochoa-Leyva,A., Krusong,K.. White spot syndrome virus impact on the expression of immune genes and gut microbiome of black tiger shrimp Penaeus monodon.
Scientific Reports,
13 (1),
996.
Articulo
100 - Murga-Garrido,S.M., Ulloa-Perez,E.J., Diaz-Benitez,C.E, Orbe-Orihuela,Y.C, Cornejo-Granados,F., Ochoa-Leyva,A, Sanchez-Flores,A, Cruz,M, Castaneda-Marquez,A.C, Plett-Torres,T, Burguete-Garcia,A.I., Lagunas-Martinez,A.. Virulence Factors of the Gut Microbiome Are Associated with BMI and Metabolic Blood Parameters in Children with Obesity.
Microbiology Spectrum,
11 (2),
e0338222.
Nacional divulgacion
101 - Cornejo-Granados,F., Ochoa-Leyva,A.. El uso de la ingeniería gen?tica en el diseño y mejoramiento de la microbiota intestinal.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
35.
Preprint
102 - Vazquez-Armenta,F.J., Aros-Corrales,M.O., Alvarez-Ainza,M.L., Bernal-Mercado,A.T., Ayala-Zavala,J.F., Ochoa-Leyva,A., Lopez-Zavala,A.A.. Antibacterial and anti-virulence potential of plant phenolic compounds against Vibrio parahaemolyticus.
F1000Research,
12,
1256.
Protocol not indexed
Artículo
104 - Arrieta,O., Molina-Romero,C., Cornejo-Granados,F., Marquina-Castillo,B., Aviles-Salas,A., Lopez-Leal,G., Cardona,A.F., Ortega-Gomez,A., Orozco-Morales,M., Ochoa-Leyva,A., Hernandez-Pando,R.. Clinical and pathological characteristics associated with the presence of the IS6110 Mycobacterim tuberculosis transposon in neoplastic cells from non-small cell lung cancer patients.
Scientific Reports,
12 (1),
2210.
Artículo
105 - Bikel,S., Gallardo-Becerra,L., Cornejo-Granados,F., Ochoa-Leyva,A.. Protocol for the isolation, sequencing, and analysis of the gut phageome from human fecal samples.
STAR Protocols,
3 (1),
101170.
Artículo
106 - Brassea-Estardante,H.A., Martinez-Cruz,O., Cardenas-Lopez,J.L., Garcia-Orozco,K.D., Ochoa-Leyva,A., Lopez-Zavala,A.A.. Identification of arginine kinase as an allergen of brown crab, Callinectes bellicosus, and in silico analysis of IgE-binding epitopes.
Molecular Immunology,
143,
147-156.
Articulo
107 - Cerezo-Cortes,M.I., Rodriguez-Castillo,J.G., Mata-Espinosa,D.A., Bini,E.I., Barrios-Payan,J., Zatarain-Barron,Z.L., Anzola,J.M., Cornejo-Granados,F., Ochoa-Leyva,A., del Portillo,P., Murcia,M.I., Hernandez-Pando,R.. Close Related Drug-Resistance Beijing Isolates of Mycobacterium tuberculosis Reveal a Different Transcriptomic Signature in a Murine Disease Progression Model.
International Journal of Molecular Sciences,
23 (9),
5157.
Artículo
108 - Medina-Salazar,S.A., Cornejo-Granados,F., Equihua-Medina,E., Ochoa-Leyva,A., Vallejo-Perez,M.R., Vega-Manriquez,D.X., Jarquin-Galvez,R., Castro-Rivera,R., Aguilar-Benitez,G., Lara-Avila,J.P.. Genome analysis of Pseudomonas sp. 14A reveals metabolic capabilities to support epiphytic behavior.
World Journal of Microbiology & Biotechnology,
38 (3),
49.
Artículo
109 - Murga-Garrido,S.M., Orbe-Orihuela,Y.C., Diaz-Benitez,C.E., Castaneda-Marquez,A.C., Cornejo-Granados,F., Ochoa-Leyva,A., Sanchez-Flores,A., Cruz,M., Burguete-Garcia,A.I., Lagunas-Martinez,A.. Alterations of the Gut Microbiome Associated to Methane Metabolism in Mexican Children with Obesity.
Children,
9 (2),
148.
Artículo
110 - Ochoa-Romo,J.P., Cornejo-Granados,F., Lopez-Zavala,A.A., Viana,M.T., Sanchez,F., Gallardo-Becerra,L., Luque-Villegas,M., Valdez-Lopez,Y., Sotelo-Mundo,R.R., Cota-Huizar,A., Lopez-Munguia,A., Ochoa-Leyva,A.. Agavin induces beneficial microbes in the shrimp microbiota under farming conditions.
Scientific Reports,
12 (1),
6392.
Artículo
111 - Orbe-Orihuela,Y.C., Godoy-Lozano,E.E., Lagunas-Martinez,A, Castaneda-Marquez,A.C, Murga-Garrido,S, Diaz-Benitez,C.E, Ochoa-Leyva,A., Cornejo-Granados,F, Cruz,M, Estrada,K, Bermudez-Morales,V.H., Sanchez-Flores,A., Burguete-Garcia,A.I. Association of Gut Microbiota with Dietary-dependent Childhood Obesity.
Archives of Medical Research,
53 (4),
407-415.
Artículo
112 - Palomino-Hermosillo,Y.A., Berumen-Varela,G., Ochoa-Jimenez,V.A., Balois-Morales,R., Jimenez-Zurita,J.O., Bautista-Rosales,P.U., Martinez-Gonzalez,M.E., Lopez-Guzman,G.G., Cortes-Cruz,M.A., Guzman,L.F., Cornejo-Granados,F., Gallardo-Becerra,L., Ochoa-Leyva,A., Alia-Tejacal,I.. Transcriptome Analysis of Soursop (Annona muricata L.) Fruit under Postharvest Storage Identifies Genes Families Involved in Ripening.
Plants (Basel),
11 (14),
1798.
Artículo
113 - Vazquez-Armenta,F.J., Valdez-Olmos,U.F., Arvizu-Flores,A.A., Ayala-Zavala,J.F., Ochoa-Leyva,A., Lopez-Zavala,A.A.. Metal Ions and Chemical Modification Reagents Inhibit the Enzymatic Activity of Lecithin-Dependent Hemolysin from Vibrio parahaemolyticus.
Toxins (Basel),
14 (9),
609.
Artículo
114 - Vazquez-Velez,E., Martinez,H., Kumar Kesarla,M., Ochoa-Leyva,A.. Studies on the effect of long-chain and head groups of nonionic surfactants synthesized from palm and coconut oil on the formation of silver nanoparticles.
Journal of Surfactants and Detergents,
25 (3),
413-426.
Preprint
115 - Cervantes-Echeverria,M., Gallardo-Becerra,L., Cornejo-Granados,F., Ochoa-Leyva,A.. A loss of crAssphage stability in the human gut virome is associated with obesity and metabolic syndrome.
bioRxiv,
Preprint posted June 17.
Artículo
116 - Bikel,S., Lopez-Leal,G., Cornejo-Granados,F., Gallardo-Becerra,L., Garcia-Lopez,R., Sanchez,F., Equihua-Medina,E., Ochoa-Romo,J.P., Lopez-Contreras,B.E., Canizales-Quinteros,S., Hernandez-Reyna,A., Mendoza-Vargas,A., Ochoa-Leyva,A.. Gut dsDNA virome shows diversity and richness alterations associated with childhood obesity and metabolic syndrome.
iScience,
24 (8),
102900.
Artículo
117 - Cerezo-Cortes,M.I., Rodriguez-Castillo,J.G., Lopez-Leal,G., Mata-Espinosa,D.A., Bini,E.I., Marquina-Castillo,B.N., Barrios-Payan,J., Zatarain-Barron,Z.L., Bobadilla del Valle,M., Cornejo-Granados,F., Ochoa-Leyva,A., Murcia,M.I., Hernandez-Pando,R.. Profiling the immune response to Mycobacterium tuberculosis Beijing family infection: a perspective from the transcriptome.
Virulence,
12 (1),
1689-1704.
Artículo
118 - Cornejo-Granados,F., Kohl,T.A., Sotomayor,F.V., Andres,S., Hernandez-Pando,R., Hurtado-Ramirez,J.M., Utpatel,C., Niemann,S., Maurer,F.P., Ochoa-Leyva,A.. Secretome characterization of clinical isolates from the Mycobacterium abscessus complex provides insight into antigenic differences.
BMC Genomics,
22 (1),
385.
Artículo
119 - Cornejo-Granados,F., Lopez-Leal,G., Mata-Espinosa,D.A., Barrios-Payan,J., Marquina-Castillo,B., Equihua-Medina,E., Zatarain-Barron,Z.L., Molina-Romero,C., Hernandez-Pando,R., Ochoa-Leyva,A.. Targeted rna-seq reveals the m. Tuberculosis transcriptome from an in vivo infection model.
Biology,
10 (9),
848.
Artículo
120 - Garcia-Lopez,R., Cornejo-Granados,F., Lopez-Zavala,A.A., Cota-Huizar,A., Sotelo-Mundo,R.R., Gomez-Gil,B., Ochoa-Leyva,A.. OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters.
Genes (Basel),
12 (4),
564.
Artículo
121 - Gomez-Fuentes,S., Hernandez-de la Fuente,S., Morales-Ruiz,V., Lopez-Recinos,D., Guevara-Salinas,A., Parada-Colin,M.C., Espitia,C., Ochoa-Leyva,A., Sanchez,F., Villalobos,N., Arce-Sillas,A., Hernandez,M., Mora,S.I., Fragoso,G., Sciutto,E., Adalid-Peralta,L.. A novel, sequencing-free strategy for the functional characterization of Taenia solium proteomic fingerprint.
PLoS Neglected Tropical Diseases,
15 (2),
e0009104.
Artículo
122 - Jatuyosporn,T., Laohawutthichai,P., Supungul,P., Sotelo-Mundo,R.R., Ochoa-Leyva,A., Tassanakajon,A., Krusong,K.. PmAP2- B depletion enhanced activation of the Toll signaling pathway during yellow head virus infection in the black tiger shrimp Penaeus monodon.
Scientific Reports,
11 (1),
10534.
Artículo
123 - Valenzuela-Chavira,I., Corona-Martinez,D.O., Garcia-Orozco,K.D., Beltran-Torres,M., Sanchez-Lopez,F., Arvizu-Flores,A.A., Sugich-Miranda,R., Lopez-Zavala,A.A., Robles-Zepeda,R.E., Islas-Osuna,M.A., Ochoa-Leyva,A., Toney,M.D., Serrano-Posada,H., Sotelo-Mundo,R.R.. A Novel Glutathione S-Transferase Gtt2 Class (VpGSTT2) Is Found in the Genome of the AHPND/EMS Vibrio parahaemolyticus Shrimp Pathogen.
Toxins,
13 (9),
664.
Artículo
124 - Vazquez-Morado,L.E., Robles-Zepeda,R.E., Ochoa-Leyva,A., Arvizu-Flores,A.A., Garibay-Escobar,A., Castillo-Yanez,F., Lopez-Zavala,A.A.. Biochemical characterization and inhibition of thermolabile hemolysin from Vibrio parahaemolyticus by phenolic compounds.
PeerJ,
9.
Artículo
125 - Calderon de la Barca,A.M, Castillo-Fimbres,R.S., Mejia-Leon,M.E., Quihui-Cota,L., Ochoa-Leyva,A., Aguayo-Patron,S.V.. Enteric parasitic infection disturbs bacterial structure in Mexican children with autoantibodies for type 1 diabetes and/or celiac disease.
Gut Pathogens,
12,
37,
37.
Artículo
126 - Fuentes-Quesada,J.P., Cornejo-Granados,F., Mata-Sotres,J.A., Ochoa-Romo,J.P., Rombenso,A.N., Guerrero-Renteria,Y., Lazo,J.P., Pohlenz,C., Ochoa-Leyva,A., Viana,M.T.. Prebiotic agavin in juvenile totoaba, Totoaba macdonaldi diets, to relieve soybean meal-induced enteritis: Growth performance, gut histology and microbiota.
Aquaculture Nutrition,
26 (6),
2115-2134.
Artículo
127 - Gallardo-Becerra,L., Cornejo-Granados,F., Garcia-Lopez,R., Valdez-Lara,A., Bikel,S., Canizales-Quinteros,S., Lopez-Contreras,B.E., Mendoza-Vargas,A., Nielsen,H., Ochoa-Leyva,A.. Metatranscriptomic analysis to define the Secrebiome, and 16S rRNA profiling of the gut microbiome in obesity and metabolic syndrome of Mexican children.
Microbial Cell Factories,
19 (1),
61.
Artículo
128 - Garcia-Lopez,R., Cornejo-Granados,F., Lopez-Zavala,A.A., Sanchez-Lopez,F., Cota-Huizar,A., Sotelo-Mundo,R.R., Guerrero,A., Mendoza-Vargas,A., Gomez-Gil,B., Ochoa-Leyva,A.. Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota.
Microorganisms,
8 (1).
Artículo
129 - Zatarain-Barron,Z.L., Ramos-Espinosa,O., Marquina-Castillo,B., Barrios-Payan,J., Cornejo-Granados,F., Maya-Lucas,O., Lopez-Leal,G., Molina-Romero,C., Anthony,R.M., Ochoa-Leyva,A., De La Rosa-Velazquez IA, Rebollar-Vega,R.G., Warren,R.M., Mata-Espinosa,D.A., Hernandez-Pando,R., van,Soolingen D.. Evidence for the Effect of Vaccination on Host-Pathogen Interactions in a Murine Model of Pulmonary Tuberculosis by Mycobacterium tuberculosis.
Frontiers in Immunology,
11,
930.
Preprint
130 - Bikel,S., Lopez-Leal,G., Cornejo-Granados,F., Gallardo-Becerra,L., Sanchez,F., Equihua-Medina,E., Ochoa-Romo,J.P., Lopez-Contreras,B.E., Canizales-Quinteros,S., Ochoa-Leyva,A.. Gut Phageome Analysis Reveals Disease-Specific Hallmarks in Childhood Obesity.
bioRxiv,
Preprint posted July 30.
Preprint
131 - Cornejo-Granados,F., Kohl,T.A., Vasquez-Sotomayor,F., Andres,S., Hernandez-Pando,R., Hurtado-Ramirez,J.M., Utpatel,C., Niemann,S., Maurer,F.P., Ochoa-Leyva,A.. In silico secretome characterization of clinical Mycobacterium abscessus isolates provides insights into antigenic differences.
bioRxiv,
Preprint posted October 22, 2020.
Artículo
132 - Astudillo-Melgar,F., Ochoa-Leyva,A., Utrilla,J., Huerta-Beristain,G.. Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico.
Frontiers in Microbiology,
10,
531 [Publicado anteriormente en repositorio bioRxiv].
Artículo
133 - Cornejo-Granados,F., Hurtado-Ramirez,J.M., Hernandez-Pando,R., Ochoa-Leyva,A.. Secret-AAR: A web server to assess the antigenic density of proteins and homology search against bacterial and parasite secretome proteins.
Genomics,
111 (6),
1514-1516.
Artículo
134 - Dautt-Castro,M., Lopez-Virgen,A.G., Ochoa-Leyva,A., Contreras-Vergara,C.A., Sortillon-Sortillon,A.P., Martinez-Tellez,M.A., Gonzalez-Aguilar,G.A., Casas-Flores,J.S., Sanudo-Barajas,A., Kuhn,D.N., Islas-Osuna,M.A.. Genome-Wide Identification of Mango (Mangifera indica L.) Polygalacturonases: Expression Analysis of Family Members and Total Enzyme Activity During Fruit Ripening.
Frontiers in Plant Science,
10,
969.
Artículo
135 - Jatuyosporn,T., Laohawutthichai,P., Supungul,P., Sotelo-Mundo,R.R., Ochoa-Leyva,A., Tassanakajon,A., Krusong,K.. Role of Clathrin Assembly Protein-2 Beta Subunit during White Spot Syndrome Virus Infection in Black Tiger Shrimp Penaeus monodon.
Scientific Reports,
9 (1),
13489.
Artículo
136 - Ruiz-Zamora,R.A., Guillaume,S., Al-Hilaly,Y.K., Al-Garawi,Z., Rodriguez-Alvarez,F.J., Zavala-Padilla,G., Perez-Carreon,J.I., Rodriguez-Ambriz,S.L., Herrera,G.A., Becerril-Lujan,B., Ochoa-Leyva,A., Melendez-Zajgla,J., Serpell,L., Del Pozo-Yauner,L.. The CDR1 and Other Regions of Immunoglobulin Light Chains are Hot Spots for Amyloid Aggregation.
Scientific Reports,
9 (1),
3123.
Editorial Material, Meeting Report
137 - Cornejo-Granados,F., Calderon de la Barca,A.M., Torres,N., Martinez-Romero,E., Torres,J., Lopez-Vidal,Y., Soberon,X., Partida-Martinez,L.P., Pinto-Cardoso,S., Alcaraz,L.D., Pardo-Lopez,L., Canizales-Quinteros,S., Puente,J.L., Ochoa-Leyva,A.. Microbiome-MX 2018: Microbiota and Microbiome opportunities in Mexico, a megadiverse country.
Research in Microbiology,
170 (4-5),
235-241.
data publication
138 - Fox-Uribe,L.Y., Hernandez-Paredes,J., Soberanes,Y., Valenzuela-Chavira,I., Garcia-Orozco,K.D., Ochoa-Leyva,A., Ochoa-Lara,K., Navarro,R.E., Sotelo-Mundo,R.R.. d-Glutamic acid hydrochloride.
IUCrData,
4 (4),
x190458.
Artículo
139 - Castro-Torres,E., Jimenez-Sandoval,P., Fernandez-de,Gortari E., Lopez-Castillo,M., Baruch-Torres,N., Lopez-Hidalgo,M., Peralta-Castro,A., Diaz-Quezada,C., Sotelo-Mundo,R.R., Benitez-Cardoza,C.G., Espinoza-Fonseca,L.M., Ochoa-Leyva,A., Brieba,L.G.. Structural Basis for the Limited Response to Oxidative and Thiol-Conjugating Agents by Triosephosphate Isomerase From the Photosynthetic Bacteria Synechocystis.
Frontiers in Molecular Biosciences,
5,
103.
Artículo
140 - Cervantes-Echeverria,M., Equihua-Medina,E., Cornejo-Granados,F., Hernandez-Reyna,A., Sanchez,F., Lopez-Contreras,B.E., Canizales-Quinteros,S., Ochoa-Leyva,A.. Whole-genome of Mexican-crAssphage isolated from the human gut microbiome.
BMC Research Notes,
11 (1),
902.
Artículo
141 - Cornejo-Granados, F., Gallardo-Becerra, L., Leonardo-Reza, M., Ochoa-Romo, J.P., Ochoa-Leyva, A.. A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota.
PeerJ,
6,
e5382.
Artículo
142 - Dautt-Castro, M., Ochoa-Leyva, A., Contreras-Vergara, C.A., Muhlia-Almazan, A., Rivera-Dominguez, M., Casas-Flores, S., Martinez-Tellez, M.A., Sanudo-Barajas, A., Osuna-Enciso, T., Baez-Sanudo, M.A., Quiroz-Figueroa, F.R., Kuhn, D.N., Islas-Osuna, M.A.. Mesocarp RNA-Seq analysis of mango (Mangifera indica L.) identify quarantine postharvest treatment effects on gene expression.
Scientia Horticulturae,
227,
146-153.
Artículo
143 - Garcia, C.F., Pedrini, N., Sanchez-Paz, A., Reyna-Blanco, C.S., Lavarias, S., Muhlia-Almazan, A., Fernandez-Gimenez, A., Laino, A., de-la-Re-Vega, E., Lukaszewicz, G., Lopez-Zavala, A.A., Brieba, L.G., Criscitello, M.F., Carrasco-Miranda, J.S., Garcia-Orozco, K.D., Ochoa-Leyva, A., Rudino-Pinera, E., Sanchez-Flores, A., Sotelo-Mundo, R.R.. De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response.
Marine Genomics,
37,
74-81.
Artículo
144 - Gonzalez-Felix, M.L., Gatlin, D.M., Urquidez-Bejarano, P., de la Ree-Rodriguez, C., Duarte-Rodriguez, L., Sanchez, F., Casas-Reyes, A., Yamamoto, F.Y., Ochoa-Leyva, A., Perez-Velazquez, M.. Effects of commercial dietary prebiotic and probiotic supplements on growth, innate immune responses, and intestinal microbiota and histology of Totoaba macdonaldi.
Aquaculture,
491,
239-251.
Artículo
145 - Lopez-Contreras, B.E., Moran-Ramos, S., Villarruel-Vazquez, R., Macias-Kauffer, L., Villamil-Ramirez, H., Leon-Mimila, P., Vega-Badillo, J., Sanchez-Munoz, F., Llanos-Moreno, L.E., Canizalez-Roman, A., del Rio-Navarro, B., Ibarra-Gonzalez, I., Vela-Amieva, M., Villarreal-Molina, T., Ochoa-Leyva, A., Aguilar-Salinas, C.A., Canizales-Quinteros, S.. Composition of gut microbiota in obese and normal-weight Mexican school-age children and its association with metabolic traits.
Pediatric Obesity,
13 (6),
381-388.
Artículo
146 - Lopez-Leal,G., Cornejo-Granados,F., Hurtado-Ramirez,J.M., Mendoza-Vargas,A., Ochoa-Leyva,A.. Functional and taxonomic classification of a greenhouse water drain metagenome.
Standards in Genomic Sciences,
13 (1),
20.
Artículo
147 - Lopez-Zavala, A.A., Guevara-Hernandez, E., Vazquez-Lujan, L.H., Sanchez-Paz, A., Garcia-Orozco, K.D., Contreras-Vergara, C.A., Lopez-Leal, G., Arvizu-Flores, A.A., Ochoa-Leyva, A., Sotelo-Mundo, R.R.. A novel thymidylate synthase from the Vibrionales, Alteromonadales, Aeromonadales, and Pasteurellales (VAAP) clade with altered nucleotide and folate binding sites.
PeerJ,
6,
e5023.
Preprint
148 - Astudillo-Melgar,F., Ochoa-Leyva,A., Utrilla,J., Huerta-Beristain,G.. Bacterial diversity and population dynamics during the fermentation of palm wine from Guerrero Mexico.
bioRxiv,
preprint posted November 29, 2018.
Divulgación
149 - Bikel, S., Ochoa-Leyva, A.. La microbiota humana, un mundo microscópico apasionante de explorar.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
13,
30-32.
Artículo
150 - Bikel, S., Jacobo-Albavera, L., Sanchez-Munoz, F., Cornejo-Granados, F., Canizales-Quinteros, S., Soberon, X., Sotelo-Mundo, R.R., Del Rio-Navarro, B.E., Mendoza-Vargas, A., Sanchez, F., Ochoa-Leyva, A.. A novel approach for human whole transcriptome analysis based on absolute gene expression of microarray data.
PeerJ,
5,
e4133.
Artículo
151 - Bobes, R.J., Navarrete-Perea, J., Ochoa-Leyva, A., Anaya, V.H., Hernandez, M., Cervantes-Torres, J., Estrada, K., Sanchez-Lopez, F., Soberon, X., Rosas, G., Maroni-Nunes C., Garcia-Varela, M., Sotelo-Mundo, R.R., Lopez-Zavala, A.A., Gevorkian, G., Acero, G., Laclette, J.P., Fragoso, G., Sciutto, E.. Experimental and theoretical approaches to investigate the immunogenicity of Taenia solium-derived KE7 antigen.
Infection and Immunity,
85,
e00395-17.
Artículo
152 - Cornejo-Granados, F., Zatarain-Barron, Z.L., Cantu-Robles, V.A., Mendoza-Vargas, A., Molina-Romero, C., Sanchez, F., Del Pozo-Yauner, L., Hernandez-Pando, R., Ochoa-Leyva, A.. Secretome Prediction of Two M. tuberculosis Clinical Isolates Reveals Their High Antigenic Density and Potential Drug Targets.
Frontiers in Microbiology,
8,
128.
Artículo
153 - Cornejo-Granados, F., Lopez-Zavala, A.A., Gallardo-Becerra, L., Mendoza-Vargas, A., Sanchez, F., Vichido, R., Brieba, L.G., Viana, M.T., Sotelo-Mundo, R.R., Ochoa-Leyva, A.. Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions.
Scientific Reports,
7 (1),
11783.
Artículo
154 - Romero-Hidalgo, S., Ochoa-Leyva, A., Garciarrubio, A., Acuna-Alonzo, V., Antunez-Arguelles, E., Balcazar-Quintero, M., Barquera-Lozano, R., Carnevale, A., Cornejo-Granados, F., Fernandez-Lopez, J.C., Garcia-Herrera, R., Garcia-Ortiz, H., Granados-Silvestre, A., Granados, J., Guerrero-Romero, F., Hernandez-Lemus, E., Leon-Mimila, P., Macin-Perez, G., Martinez-Hernandez, A., Menjivar, M., Morett, E., Orozco, L., Ortiz-Lopez, G., Perez-Villatoro, F., Rivera-Morales, J., Riveros-McKay, F., Villalobos-Comparan, M., Villamil-Ramirez, H., Villarreal-Molina, T., Canizales-Quinteros, S., Soberon, X.. Demographic history and biologically relevant genetic variation of Native Mexicans inferred from whole-genome sequencing.
Nature Communications,
8 (1),
1005.
Artículo
155 - Lopez-Zavala,A.A., Carrasco-Miranda,J.S., Ramirez-Aguirre,C.D., Lopez-Hidalgo,M., Benitez-Cardoza,C.G., Ochoa-Leyva,A., Cardona-Felix,C.S., Diaz-Quezada,C., Rudino-Pinera,E., Sotelo-Mundo,R.R., Brieba,L.G.. Structural insights from a novel invertebrate triosephosphate isomerase from Litopenaeus vannamei.
Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics,
1864 (12),
1696-1706.
Revisión
156 - Bikel,S., Valdez-Lara,A., Cornejo-Granados,F., Rico,K., Canizales-Quinteros,S., Soberon,X., Del Pozo-Yauner,L., Ochoa-Leyva,A.. Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome.
Computational and Structural Biotechnology Journal,
13,
390-401.
Artículo
157 - Dautt-Castro,M., Ochoa-Leyva,A., Contreras-Vergara,C.A., Pacheco-Sanchez,M.A., Casas-Flores,S., Sanchez-Flores,A., Kuhn,D.N., Islas-Osuna,M.A.. Mango (Mangifera indica L.) cv. Kent fruit mesocarp de novo transcriptome assembly identifies gene families important for ripening.
Frontiers in Plant Science,
6.
Artículo
158 - Gomez,S., Adalid-Peralta,L., Palafox-Fonseca,H., Cantu-Robles,V.A., Soberon,X., Sciutto,E., Fragoso,G., Bobes,R.J., Laclette,J.P., Yauner,L.D., Ochoa-Leyva,A.. Genome analysis of Excretory/Secretory proteins in Taenia solium reveals their Abundance of Antigenic Regions (AAR).
Scientific Reports,
5,
9683 [erratum en vol 5 (12385) ].
Internacional
159 - Pozo-Yauner,L., Becerril,B., Ochoa-Leyva,A., Rodriguez-Ambriz,S.L., Perez-Carrion,J.I., Zavala-Padilla,G., Sanchez-Lopez,R., Fernandez-Velasco,D.A.. The Structural Determinants of the Immunoglobulin Light Chain Amyloid Aggregation. Physical Biology of Proteins and Peptides: Theory, Experiment, and Simulation.
1-28,
Cham.
Artículo
160 - Del Pozo-Yauner,L., Wall,J.S., Gonzalez-Andrade,M., Sanchez-Lopez,R., Rodriguez-Ambriz,S.L., Perez-Carreon,J.I., Ochoa-Leyva,A., Fernandez-Velasco,D.A.. The N-terminal strand modulates immunoglobulin light chain fibrillogenesis.
Biochemical and Biophysical Research Communications,
443 (2),
495-499.
Artículo
161 - Ghaffari,N., Sanchez-Flores,A., Doan,R., Garcia-Orozco,K.D., Chen,P.L., Ochoa-Leyva,A., Lopez-Zavala,A.A., Carrasco,J.S., Hong,C., Brieba,L.G., Rudino-Pinera,E., Blood,P.D., Sawyer,J.E., Johnson,C.D., Dindot,S.V., Sotelo-Mundo,R.R., Criscitiello,M.F.. Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture.
Scientific Reports,
4,
7081.
Artículo
162 - Gomez-Jimenez,S., Noriega-Orozco,L., Sotelo-Mundo,R.R., Cantu-Robles,V.A., Cobian-Guemes,A.G., Cota-Verdugo,R.G., Gamez-Alejo,L.A., Del Pozo-Yauner,L., Guevara-Hernandez,E., Garcia-Orozco,K.D., Lopez-Zavala,A.A., Ochoa-Leyva,A.. High-Quality Draft Genomes of Two Vibrio parahaemolyticus Strains Aid in Understanding Acute Hepatopancreatic Necrosis Disease of Cultured Shrimps in Mexico.
Genome Announcements,
2 (4).
*
Artículo
163 - Lara-Gonzalez,S., Estrella-Hernandez,P., Ochoa-Leyva,A., Portillo-Tellez,M.C., Caro-Gomez,L.A., Figueroa-Angulo,E.E., Salgado-Lugo,H., Miranda-Ozuna,J.F., Ortega-Lopez,J., Arroyo,R., Brieba,L.G., Benitez-Cardoza,C.G.. Structural and thermodynamic folding characterization of triosephosphate isomerases from Trichomonas vaginalis reveals the role of destabilizing mutations following gene duplication.
Proteins: Structure, Function and Bioinformatics,
82 (1),
22-33.
*
Artículo
164 - Ochoa-Leyva,A., Montero-Moran,G., Saab-Rincon,G., Brieba,L.G., Soberon,X.. Alternative Splice Variants in TIM Barrel Proteins from Human Genome Correlate with the Structural and Evolutionary Modularity of this Versatile Protein Fold.
PLoS ONE,
8 (8),
e70582.
Artículo
165 - Tsai,I.J., Zarowiecki,M., Holroyd,N., Garciarrubio,A., Sanchez-Flores,A., Brooks,K.L., Tracey,A., Bobes,R.J., Fragoso,G., Sciutto,E., Aslett,M., Beasley,H., Bennett,H.M., Cai,Jianping, Camicia,F., Clark,R., Cucher,M., De Silva,N., Day,T.A., Deplazes,P., Estrada,K., Fernandez,C., Holland,P.W.H., Hou,Junling, Hu,Songnian, Huckvale,Thomas, Hung,S.S., Kamenetzky,L., Keane,J.A., Kiss,F., Koziol,U., Lambert,O., Liu,K., Luo,Xuenong, Luo,Yingfeng, Macchiaroli,N., Nichol,S., Paps,Jordi, Parkinson,J., Pouchkina-Stantcheva,N., Riddiford,N., Rosenzvit,M., Salinas,G., Wasmuth,James D., Zamanian,M., Zheng,Yadong, Cai,Xuepeng, Soberon,X., Olson,P.D., Laclette,J.P., Brehm,Klaus, Berriman,M., Ochoa-Leyva,A.. The genomes of four tapeworm species reveal adaptations to parasitism.
Nature,
496 (7443),
57-63.
Artículo
166 - Figueroa-Angulo,E.E., Estrella-Hernandez,P., Salgado-Lugo,H., Ochoa-Leyva,A., Gomez-Puyou,A., Campos,S.S., Montero-Moran,G., Ortega-Lopez,J., Saab-Rincon,G., Arroyo,R., Benitez-Cardoza,C.G., Brieba,L.G.. Cellular and biochemical characterization of two closely related triosephosphate isomerases from Trichomonas vaginalis.
Parasitology,
139 (13),
1729-1738.
Artículo
167 - Ochoa-Leyva,A., Barona-Gomez,F., Saab-Rincon,G., Verdel-Aranda,K., Sanchez,F., Soberon,X.. Exploring the Structure-Function Loop Adaptability of a (beta/alpha)(8)-Barrel Enzyme through Loop Swapping and Hinge Variability.
Journal of Molecular Biology,
411 (1),
143-157.
168 - Ochoa Leyva, Adrian. Explorando la relacion estructurafuncion de las asas SS/a de un barril (SS/a)8 : implicaciones para el diseno de nuevas funciones enzimaticas .
Instituto de Biotecnologia,
Doctorado en Ciencias Bioquimicas,
UNAM.
Asesor: Saab Rincon, Gloria
Artículo
169 - Ochoa-Leyva,A., Soberon,X., Sanchez,F., Arguello,M., Montero-Moran,G., Saab-Rincon,G.. Protein design through systematic catalytic loop exchange (SCLE) in the (beta/alpha)(8)-fold.
Journal of Molecular Biology,
387 (4),
949-964.
Artículo
170 - Wright,H., Noda-Garcia,L., Ochoa-Leyva,A., Hodgson,D.A., Fulop,V., Barona-Gomez,F.. The structure/function relationship of a dual-substrate (betaalpha)(8)-isomerase.
Biochemical and Biophysical Research Communications,
365 (1),
16-21.
171 - Ochoa Leyva, Adrian. Diseno de proteinas a traves de intercambio de asas cataliticas en barriles TIM.
Instituto de Biotecnologia,
Maestria en Ciencias Bioquimicas,
UNAM.
Asesor: Saab Rincon, Gloria
Internacional
172 - Barona-Gomez,F., Ochoa-Leyva,A., Soberon,X.. Advances and perspectives in protein engineering: from natural history to directed evolution of enzymes. Advances in Protein Physical Chemistry.
407-438,
Kerala: Research Signpost.