Dr. Rodrigo García López
Postdoctoral CONACYT
Licenciatura, DOCTORADO EN BIOTECNOLOGIA
Total de publicaciones: 24
- Tipo
- Fecha
Artículo in press
1 - Garcia-Lopez,R., Rivera-Gutierrez,X., Rosales-Rivera,M., Zarate,S., Munoz-Medina,J.E., Roche,B., Herrera-Estrella,A., Gomez-Gil,B., Sanchez-Flores,A., Taboada,B., Arias,C.F. (2023). SARS-CoV-2 BW.1, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations.
Infection,
Apr 14 [Online ahead of print].
Artículo
2 - Loza,A., Wong-Chew,R.M., Jimenez-Corona,M.E., Zarate,S., Lopez,S., Ciria,R., Palomares,D., Garcia-Lopez,R., Isa,P., Taboada,B., Rosales,M., Boukadida,C., Herrera-Estrella,A., Mojica,N.S., Rivera-Gutierrez,X., Munoz-Medina,J.E., Salas-Lais,A.G., Sanchez-Flores,A., Vazquez-Perez,J.A., Arias,C.F., Gutierrez-Rios,R.M. (2023). Two-year follow-up of the COVID-19 pandemic in Mexico.
Frontiers in Public Health,
10,
1050673.
Artículo
3 - Zarate,S., Taboada,B., Rosales-Rivera,M., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Gomez-Gil,B., Selem-Mojica N., Salas-Lais,A.G., Vazquez-Perez,J.A., Cabrera-Gaytan,D.A., Fernandes-Matano,L., Uribe-Noguez,L.A., Chale-Dzul,J.B., Maldonado Meza,B.I., Mejia-Nepomuceno,F., Perez-Padilla,R., Gutierrez-Rios,R.M., Loza,A, Roche,B, Lopez,S, Arias,C.F (2023). Omicron-BA.1 Dispersion Rates in Mexico Varied According to the Regional Epidemic Patterns and the Diversity of Local Delta Subvariants.
Viruses,
15 (1),
243.
Revisión
4 - Garcia-Lopez,R., Laresgoiti-Servitje,E., Lemus-Martin,R., Sanchez-Flores,A., Sanders-Velez,C. (2022). The New SARS-CoV-2 Variants and Their Epidemiological Impact in Mexico.
MBio,
13 (5),
e0106021.
Artículo
5 - Isa,P., Taboada,B., Garcia-Lopez,R., Boukadida,C., Ramirez-Gonzalez,J.E., Vazquez-Perez,J.A., Hernandez-Teran,A., Romero-Espinoza,J.A., Munoz-Medina,J.E., Grajales-Muniz,C., Rincon-Rubio,A., Matias-Florentino,M., Sanchez-Flores,A., Mendieta-Condado,E., Barrera-Badillo,G., Lopez,S., Hernandez-Rivas,L., Lopez-Martinez,I., Avila-Rios,S., Arias,C.F. (2022). Metagenomic analysis reveals differences in the co-occurrence and abundance of viral species in SARS-CoV-2 patients with different severity of disease.
BMC Infectious Diseases,
22 (1),
792.
Artículo
6 - Taboada,B., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Boukadida,C., Gomez-Gil,B., Selem-Mojica N., Rosales-Rivera,M., Salas-Lais,A.G., Gutierrez-Rios,R.M., Loza,A., Rivera-Gutierrez,X., Vazquez-Perez,J.A., Avila-Rios,S., Hurtado,J.M., Herrera-Najera,C.I., Nunez-Contreras,J.J., Sarquiz-Martinez,B, Garcia-Arias,V.E., Santiago-Mauricio,M.G., Martinez-Miguel,B., Enciso-Ibarra,J., Chaidez-Quiroz,C., Isa,P., Wong-Chew,R.M., Jimenez-Corona,M.E., Lopez,S., Arias,C.F. (2022). Dominance of Three Sublineages of the SARS-CoV-2 Delta Variant in Mexico.
Viruses,
14 (6),
1165.
Artículo
7 - Zarate,S., Taboada,B., Munoz-Medina,J.E., Isa,P., Sanchez-Flores,A., Boukadida,C., Herrera-Estrella,A., Selem-Mojica N., Rosales-Rivera,M., Gomez-Gil,B., Salas-Lais,A.G., Santacruz-Tinoco,C.E., Montoya-Fuentes,H., ALvarado-Yaah,J.E., Molina-Salinas,G.M., Espinoza-Ayala,G.E., Enciso-Moreno,J.A., Gutierrez-Rios,R.M., Loza,A., Moreno-Contreras,J., Garcia-Lopez,R., Rivera-Gutierrez,X., Comas-Garcia,A., Wong-Chew,R.M., Jimenez-Corona,M.E., del Angel,R.M., Vazquez-Perez,J.A., Matias-Florentino,M., Perez-Garcia,M., Avila-Rios,S., Castelan-Sanchez,H.G., Delaye,L., Martinez-Castilla,L.P., Escalera-Zamudio,M., Lopez,S., Arias,C.F. (2022). The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in Mexico.
Microbiology Spectrum,
10 (2),
e0224021.
Artículo
8 - Bikel,S., Lopez-Leal,G., Cornejo-Granados,F., Gallardo-Becerra,L., Garcia-Lopez,R., Sanchez,F., Equihua-Medina,E., Ochoa-Romo,J.P., Lopez-Contreras,B.E., Canizales-Quinteros,S., Hernandez-Reyna,A., Mendoza-Vargas,A., Ochoa-Leyva,A. (2021). Gut dsDNA virome shows diversity and richness alterations associated with childhood obesity and metabolic syndrome.
iScience,
24 (8),
102900.
Artículo
9 - Garcia-Lopez,R., Cornejo-Granados,F., Lopez-Zavala,A.A., Cota-Huizar,A., Sotelo-Mundo,R.R., Gomez-Gil,B., Ochoa-Leyva,A. (2021). OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters.
Genes (Basel),
12 (4),
564.
Artículo
10 - Gallardo-Becerra,L., Cornejo-Granados,F., Garcia-Lopez,R., Valdez-Lara,A., Bikel,S., Canizales-Quinteros,S., Lopez-Contreras,B.E., Mendoza-Vargas,A., Nielsen,H., Ochoa-Leyva,A. (2020). Metatranscriptomic analysis to define the Secrebiome, and 16S rRNA profiling of the gut microbiome in obesity and metabolic syndrome of Mexican children.
Microbial Cell Factories,
19 (1),
61.
Artículo
11 - Garcia-Lopez,R., Cornejo-Granados,F., Lopez-Zavala,A.A., Sanchez-Lopez,F., Cota-Huizar,A., Sotelo-Mundo,R.R., Guerrero,A., Mendoza-Vargas,A., Gomez-Gil,B., Ochoa-Leyva,A. (2020). Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota.
Microorganisms,
8 (1).
Artículo
12 - Mendez-Perez,R., Garcia-Lopez,R., Bautista-Lopez,J.S., Vazquez-Castellanos,J., Alvarez-Gonzalez,C., Pena-Marin,E., Baltierra-Trejo,E., Adams-Schroeder,R., Dominguez-Rodriguez,V., Melgar-Valdes,C., Martinez-Garcia,R., Moya,A., Gomez-Cruz,R. (2020). High-throughput sequencing of the 16S rRNA gene to analyze the gut microbiome in juvenile and adult tropical gar (Atractosteus tropicus).
Latin American Journal of Aquatic Research,
48 (3),
456-479.
*
Artículo
13 - Amaretti,A., Gozzoli,C., Simone,M., Raimondi,S., Righini,L., Perez-Brocal,V., Garcia-Lopez,R., Moya,A., Rossi,M. (2019). Profiling of Protein Degraders in Cultures of Human Gut Microbiota.
Frontiers in Microbiology,
10.
*
Revisión
14 - Garcia-Lopez,R., Perez-Brocal,V., Moya,A. (2019). Beyond cells - The virome in the human holobiont.
Microbial Cell,
6 (9),
373-396.
*
Artículo
15 - Garcia-Lopez,R., Vazquez-Castellanos,J.F., Moya,A. (2015). Fragmentation and coverage variation in viral metagenome assemblies, and their effect in diversity calculations.
Frontiers in Bioengineering and Biotechnology,
3,
141.
*
Artículo
16 - Perez-Brocal,V., Garcia-Lopez,R., Nos,P., Beltran,B., Moret,I., Moya,A. (2015). Metagenomic Analysis of Crohn's Disease Patients Identifies Changes in the Virome and Microbiome Related to Disease Status and Therapy, and Detects Potential Interactions and Biomarkers.
Inflammatory Bowel Diseases,
21 (11),
2515-2532.
*
Artículo
17 - Garcia-Lopez,R., Moya,A., Bagan,J.V., Perez-Brocal,V. (2014). Retrospective case-control study of viral pathogen screening in proliferative verrucous leukoplakia lesions.
Clinical Otolaryngology,
39 (5),
272-280.
*
Revisión
18 - Gonzalez-Candelas,F., Bracho,M.A., Comas,I., Auria,G.D., Dzunkova,M., Garcia,R., Gosalbes,M.J., Isaac,S., Latorre,A., Lopez-Labrador,F.X., Galindo,J.A.P., Palero,F., Perez-Brocal,V., Perez-Cobas,A.E., Sanchez-Buso,L., Silva,F.J., Vazquez-Castellanos,J.F., Moya,A. (2014). Estudios de epidemiología molecular en población inmigrante en España.
Revista Espanola de Salud Publica,
88 (6),
819-828.
*
Artículo
19 - Vazquez-Castellanos,J.F., Garcia-Lopez,R., Perez-Brocal,V., Pignatelli,M., Moya,A. (2014). Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.
BMC Genomics,
15,
37.
*
Articulo
20 - Perez-Brocal,V., Garcia-Lopez,R., Vazquez-Castellanos,J.F., Nos,P., Beltran,B., Latorre,A., Moya,A. (2013). Study of the Viral and Microbial Communities Associated With Crohn's Disease: A Metagenomic Approach.
Clinical and Translational Gastroenterology,
4,
e36.
*
Artículo
21 - Garcia-Lopez,R., Perez-Brocal,V., Diez-Domingo,J., Moya,A. (2012). Gut Microbiota in Children Vaccinated with Rotavirus Vaccine.
Pediatric Infectious Disease Journal,
31 (12),
1300-1302.
*
Artículo
22 - Quinto-Cortes,C.D., Arriola,L.A., Garcia-Hughes,G., Garcia-Lopez,R., Molina,D.P., Flores,M., Palacios,R., Pinero,D. (2010). Genetic Characterization of Indigenous Peoples from Oaxaca, Mexico, and Its Relation to Linguistic and Geographic Isolation.
Human BiologyHum.Biol.,
82 (4),
409-432.
*
Capítulo internacional
23 - Garcia-Lopez,R. (2018). Construction of a Comprehensive Database from the Existing Viral Sequences Available from the International Nucleotide Sequence Database Collaboration. Methods in Molecular Biology 1838.
231-243,
1838.
*
Preprint
24 - Garcia-Lopez,R., Rivera-Gutierrez,X., Rosales-Rivera,M., Taboada,B., Zarate,S., Munoz-Medina,J.E., Roche,B., Herrera-Estrella,A., Gomez-Gil,B., Sanchez-Flores,A., Arias,C.F. (2022). SARS-CoV-2 BW.1, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations.
Research Square,
Preprint 21 Nov.
Artículo in press
25 - Garcia-Lopez,R., Rivera-Gutierrez,X., Rosales-Rivera,M., Zarate,S., Munoz-Medina,J.E., Roche,B., Herrera-Estrella,A., Gomez-Gil,B., Sanchez-Flores,A., Taboada,B., Arias,C.F.. SARS-CoV-2 BW.1, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations.
Infection,
Apr 14 [Online ahead of print].
Artículo
26 - Loza,A., Wong-Chew,R.M., Jimenez-Corona,M.E., Zarate,S., Lopez,S., Ciria,R., Palomares,D., Garcia-Lopez,R., Isa,P., Taboada,B., Rosales,M., Boukadida,C., Herrera-Estrella,A., Mojica,N.S., Rivera-Gutierrez,X., Munoz-Medina,J.E., Salas-Lais,A.G., Sanchez-Flores,A., Vazquez-Perez,J.A., Arias,C.F., Gutierrez-Rios,R.M.. Two-year follow-up of the COVID-19 pandemic in Mexico.
Frontiers in Public Health,
10,
1050673.
Artículo
27 - Zarate,S., Taboada,B., Rosales-Rivera,M., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Gomez-Gil,B., Selem-Mojica N., Salas-Lais,A.G., Vazquez-Perez,J.A., Cabrera-Gaytan,D.A., Fernandes-Matano,L., Uribe-Noguez,L.A., Chale-Dzul,J.B., Maldonado Meza,B.I., Mejia-Nepomuceno,F., Perez-Padilla,R., Gutierrez-Rios,R.M., Loza,A, Roche,B, Lopez,S, Arias,C.F. Omicron-BA.1 Dispersion Rates in Mexico Varied According to the Regional Epidemic Patterns and the Diversity of Local Delta Subvariants.
Viruses,
15 (1),
243.
Revisión
28 - Garcia-Lopez,R., Laresgoiti-Servitje,E., Lemus-Martin,R., Sanchez-Flores,A., Sanders-Velez,C.. The New SARS-CoV-2 Variants and Their Epidemiological Impact in Mexico.
MBio,
13 (5),
e0106021.
Artículo
29 - Isa,P., Taboada,B., Garcia-Lopez,R., Boukadida,C., Ramirez-Gonzalez,J.E., Vazquez-Perez,J.A., Hernandez-Teran,A., Romero-Espinoza,J.A., Munoz-Medina,J.E., Grajales-Muniz,C., Rincon-Rubio,A., Matias-Florentino,M., Sanchez-Flores,A., Mendieta-Condado,E., Barrera-Badillo,G., Lopez,S., Hernandez-Rivas,L., Lopez-Martinez,I., Avila-Rios,S., Arias,C.F.. Metagenomic analysis reveals differences in the co-occurrence and abundance of viral species in SARS-CoV-2 patients with different severity of disease.
BMC Infectious Diseases,
22 (1),
792.
Artículo
30 - Taboada,B., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Boukadida,C., Gomez-Gil,B., Selem-Mojica N., Rosales-Rivera,M., Salas-Lais,A.G., Gutierrez-Rios,R.M., Loza,A., Rivera-Gutierrez,X., Vazquez-Perez,J.A., Avila-Rios,S., Hurtado,J.M., Herrera-Najera,C.I., Nunez-Contreras,J.J., Sarquiz-Martinez,B, Garcia-Arias,V.E., Santiago-Mauricio,M.G., Martinez-Miguel,B., Enciso-Ibarra,J., Chaidez-Quiroz,C., Isa,P., Wong-Chew,R.M., Jimenez-Corona,M.E., Lopez,S., Arias,C.F.. Dominance of Three Sublineages of the SARS-CoV-2 Delta Variant in Mexico.
Viruses,
14 (6),
1165.
Artículo
31 - Zarate,S., Taboada,B., Munoz-Medina,J.E., Isa,P., Sanchez-Flores,A., Boukadida,C., Herrera-Estrella,A., Selem-Mojica N., Rosales-Rivera,M., Gomez-Gil,B., Salas-Lais,A.G., Santacruz-Tinoco,C.E., Montoya-Fuentes,H., ALvarado-Yaah,J.E., Molina-Salinas,G.M., Espinoza-Ayala,G.E., Enciso-Moreno,J.A., Gutierrez-Rios,R.M., Loza,A., Moreno-Contreras,J., Garcia-Lopez,R., Rivera-Gutierrez,X., Comas-Garcia,A., Wong-Chew,R.M., Jimenez-Corona,M.E., del Angel,R.M., Vazquez-Perez,J.A., Matias-Florentino,M., Perez-Garcia,M., Avila-Rios,S., Castelan-Sanchez,H.G., Delaye,L., Martinez-Castilla,L.P., Escalera-Zamudio,M., Lopez,S., Arias,C.F.. The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in Mexico.
Microbiology Spectrum,
10 (2),
e0224021.
Preprint
32 - Garcia-Lopez,R., Rivera-Gutierrez,X., Rosales-Rivera,M., Taboada,B., Zarate,S., Munoz-Medina,J.E., Roche,B., Herrera-Estrella,A., Gomez-Gil,B., Sanchez-Flores,A., Arias,C.F.. SARS-CoV-2 BW.1, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations.
Research Square,
Preprint 21 Nov.
Artículo
33 - Bikel,S., Lopez-Leal,G., Cornejo-Granados,F., Gallardo-Becerra,L., Garcia-Lopez,R., Sanchez,F., Equihua-Medina,E., Ochoa-Romo,J.P., Lopez-Contreras,B.E., Canizales-Quinteros,S., Hernandez-Reyna,A., Mendoza-Vargas,A., Ochoa-Leyva,A.. Gut dsDNA virome shows diversity and richness alterations associated with childhood obesity and metabolic syndrome.
iScience,
24 (8),
102900.
Artículo
34 - Garcia-Lopez,R., Cornejo-Granados,F., Lopez-Zavala,A.A., Cota-Huizar,A., Sotelo-Mundo,R.R., Gomez-Gil,B., Ochoa-Leyva,A.. OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters.
Genes (Basel),
12 (4),
564.
Artículo
35 - Gallardo-Becerra,L., Cornejo-Granados,F., Garcia-Lopez,R., Valdez-Lara,A., Bikel,S., Canizales-Quinteros,S., Lopez-Contreras,B.E., Mendoza-Vargas,A., Nielsen,H., Ochoa-Leyva,A.. Metatranscriptomic analysis to define the Secrebiome, and 16S rRNA profiling of the gut microbiome in obesity and metabolic syndrome of Mexican children.
Microbial Cell Factories,
19 (1),
61.
Artículo
36 - Garcia-Lopez,R., Cornejo-Granados,F., Lopez-Zavala,A.A., Sanchez-Lopez,F., Cota-Huizar,A., Sotelo-Mundo,R.R., Guerrero,A., Mendoza-Vargas,A., Gomez-Gil,B., Ochoa-Leyva,A.. Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota.
Microorganisms,
8 (1).
Artículo
37 - Mendez-Perez,R., Garcia-Lopez,R., Bautista-Lopez,J.S., Vazquez-Castellanos,J., Alvarez-Gonzalez,C., Pena-Marin,E., Baltierra-Trejo,E., Adams-Schroeder,R., Dominguez-Rodriguez,V., Melgar-Valdes,C., Martinez-Garcia,R., Moya,A., Gomez-Cruz,R.. High-throughput sequencing of the 16S rRNA gene to analyze the gut microbiome in juvenile and adult tropical gar (Atractosteus tropicus).
Latin American Journal of Aquatic Research,
48 (3),
456-479.
*
Artículo
38 - Amaretti,A., Gozzoli,C., Simone,M., Raimondi,S., Righini,L., Perez-Brocal,V., Garcia-Lopez,R., Moya,A., Rossi,M.. Profiling of Protein Degraders in Cultures of Human Gut Microbiota.
Frontiers in Microbiology,
10.
*
Revisión
39 - Garcia-Lopez,R., Perez-Brocal,V., Moya,A.. Beyond cells - The virome in the human holobiont.
Microbial Cell,
6 (9),
373-396.
*
Capítulo internacional
40 - Garcia-Lopez,R.. Construction of a Comprehensive Database from the Existing Viral Sequences Available from the International Nucleotide Sequence Database Collaboration. Methods in Molecular Biology 1838.
231-243,
1838.
*
Artículo
41 - Garcia-Lopez,R., Vazquez-Castellanos,J.F., Moya,A.. Fragmentation and coverage variation in viral metagenome assemblies, and their effect in diversity calculations.
Frontiers in Bioengineering and Biotechnology,
3,
141.
*
Artículo
42 - Perez-Brocal,V., Garcia-Lopez,R., Nos,P., Beltran,B., Moret,I., Moya,A.. Metagenomic Analysis of Crohn's Disease Patients Identifies Changes in the Virome and Microbiome Related to Disease Status and Therapy, and Detects Potential Interactions and Biomarkers.
Inflammatory Bowel Diseases,
21 (11),
2515-2532.
*
Artículo
43 - Garcia-Lopez,R., Moya,A., Bagan,J.V., Perez-Brocal,V.. Retrospective case-control study of viral pathogen screening in proliferative verrucous leukoplakia lesions.
Clinical Otolaryngology,
39 (5),
272-280.
*
Revisión
44 - Gonzalez-Candelas,F., Bracho,M.A., Comas,I., Auria,G.D., Dzunkova,M., Garcia,R., Gosalbes,M.J., Isaac,S., Latorre,A., Lopez-Labrador,F.X., Galindo,J.A.P., Palero,F., Perez-Brocal,V., Perez-Cobas,A.E., Sanchez-Buso,L., Silva,F.J., Vazquez-Castellanos,J.F., Moya,A.. Estudios de epidemiología molecular en población inmigrante en España.
Revista Espanola de Salud Publica,
88 (6),
819-828.
*
Artículo
45 - Vazquez-Castellanos,J.F., Garcia-Lopez,R., Perez-Brocal,V., Pignatelli,M., Moya,A.. Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.
BMC Genomics,
15,
37.
*
Articulo
46 - Perez-Brocal,V., Garcia-Lopez,R., Vazquez-Castellanos,J.F., Nos,P., Beltran,B., Latorre,A., Moya,A.. Study of the Viral and Microbial Communities Associated With Crohn's Disease: A Metagenomic Approach.
Clinical and Translational Gastroenterology,
4,
e36.
*
Artículo
47 - Garcia-Lopez,R., Perez-Brocal,V., Diez-Domingo,J., Moya,A.. Gut Microbiota in Children Vaccinated with Rotavirus Vaccine.
Pediatric Infectious Disease Journal,
31 (12),
1300-1302.
*
Artículo
48 - Quinto-Cortes,C.D., Arriola,L.A., Garcia-Hughes,G., Garcia-Lopez,R., Molina,D.P., Flores,M., Palacios,R., Pinero,D.. Genetic Characterization of Indigenous Peoples from Oaxaca, Mexico, and Its Relation to Linguistic and Geographic Isolation.
Human BiologyHum.Biol.,
82 (4),
409-432.
*