Dr. Paul Hernández Herrera
Ex-colaborador y/o ex-alumnoInvestigador Posdoctoral por Proyecto
Total de publicaciones: 29
- Tipo
- Fecha
Artículo
1 - Hernandez,H.O., Montoya,F., Hernandez-Herrera,P., Diaz-Guerrero,D.S., Olveres,J., Bloomfield-Gadelha,H., Darszon,A., Escalante-Ramirez,B., Corkidi,G. (2024). Feature-Based 3D+t Descriptors of Hyperactivated Human Sperm Beat Patterns.
Heliyon,
10 (5),
e26645.
Artículo
2 - Corkidi,G., Montoya,F., Gonzalez-Cota,A.L., Hernandez-Herrera,P., Bruce,N.C., Bloomfield-Gadelha,H., Darszon,A. (2023). Human sperm rotate with a conserved direction during free swimming in four dimensions .
Journal of Cell Science,
136 (22),
jcs.261306.
Artículo
3 - Hernandez-Herrera,P., Abonza,V., Sanchez-Contreras,J., Darszon,A., Guerrero,A. (2023). Deep Learning-Based Classification and Segmentation of Sperm head and flagellum for Image-Based Flow Cytometry.
Computacion y Sistemas,
27 (4),
1133-1145.
Artículo
4 - Alva,A., Brito-Alarcon,E., Linares,A., Torres-Garcia,E., Hernandez,H.O., Pinto-Camara,R., Martinez,D., Hernandez-Herrera,P., D'Antuono,R., Wood,C., Guerrero,A. (2022). Fluorescence fluctuation based super resolution microscopy, basic concepts for an easy start.
Journal of Microscopy,
288 (3),
218-241.
Artículo
5 - De Leon-Rodriguez,S.G., Hernandez-Herrera,P., Aguilar-Flores,C., Perez-Koldenkova,V., Guerrero,A., Mantilla,A., Fuentes-Panana,E.M., Wood,C., Bonifaz,L.C. (2022). A Machine Learning Workflow of Multiplexed Immunofluorescence Images to Interrogate Activator and Tolerogenic Profiles of Conventional Type 1 Dendritic Cells Infiltrating Melanomas of Disease-Free and Metastatic Patients.
Journal of Oncology,
2022,
9775736.
Artículo
6 - Hernandez-Herrera,P., Ugartechea-Chirino,Y., Torres-Martinez,H.H., Arzola,A.V., Chairez-Veloz,J.E., Garcia-Ponce,B., de la Paz Sanchez,M., Garay-Arroyo,A., Alvarez-Buylla,E.R., Dubrovsky,J.G., Corkidi,G. (2022). Live Plant Cell Tracking: Fiji plugin to analyze cell proliferation dynamics and understand morphogenesis.
Plant Physiology,
188 (2),
846-860.
Artículo
7 - Corkidi,G., Hernandez-Herrera,P, Montoya,F., Gadelha,H., Darszon,A. (2021). Long-term segmentation-free assessment of head-flagellum movement and intracellular calcium in swimming human sperm.
Journal of Cell Science,
134 (3),
jcs250654.
Revisión
8 - Mata-Martinez,E., Sanchez-Cardenas,C., Chavez,J.C., Guerrero,A., Trevino,C.L., Corkidi,G., Montoya,F., Hernandez-Herrera,P., Buffone,M.G., Balestrini,P.A., Darszon,A. (2021). Role of calcium oscillations in sperm physiology.
Biosystems,
209,
104524 [correction 104546].
Artículo
9 - Bribiesca,A., Montoya,F., Hernandez,P., Ramos,E., Corkidi,G. (2020). Device for experimental characterization of the 4D flow inside an evaporating sessile water droplet.
Review of Scientific Instruments,
91 (1),
016101.
Artículo
10 - Gadelha,H., Hernandez-Herrera,P., Montoya,F., Darszon,A., Corkidi,G. (2020). Human sperm uses asymmetric and anisotropic flagellar controls to regulate swimming symmetry and cell steering.
Science Advances,
6 (31),
eaba5168,
[Retraction vol 7 (21) eaau9116] .
Artículo
11 - Torres-Martinez,H.H., Hernandez-Herrera,P, Corkidi,G, Dubrovsky,J.G (2020). From one cell to many: Morphogenetic field of lateral root founder cells in Arabidopsis thaliana is built by gradual recruitment.
Proceedings of the National Academy of Sciences,
117 (34),
20943-20949.
Artículo
12 - Hernandez-Herrera, P., Montoya, F., Rendon-Mancha, J.M., Darszon, A., Corkidi, G. (2018). 3D+t Human Sperm Flagellum Tracing in low SNR Fluorescence Images.
IEEE Transactions on Medical Imaging,
37 (10),
2236-2247.
Artículo
13 - Singh, P.K., Hernandez-Herrera, P., Labate, D., Papadakis, M. (2017). Automated 3-D Detection of Dendritic Spines from In Vivo Two-Photon Image Stacks.
Neuroinformatics,
15 (4),
303-319.
Artículo
14 - Hernandez-Herrera,P., Papadakis,M., Kakadiaris,I.A. (2016). Multi-Scale Segmentation of Neurons Based on One-Class Classification.
Journal of Neuroscience Methods,
266,
94-106.
*
Artículo
15 - Santamaria-Pang,A., Hernandez-Herrera,P., Papadakis,M., Saggau,P., Kakadiaris,I.A. (2015). Automatic Morphological Reconstruction of Neurons from Multiphoton and Confocal Microscopy Images Using 3D Tubular Models.
Neuroinformatics,
13 (3),
297-320.
*
Memoria in extenso
16 - Diaz-Guerrero,D.S., Montoya,F., Hernandez,H.O., Hernandez-Herrera,P., Darszon,A., Corkidi,G. (2024). Computation of Human-Sperm Local Flagellar Instantaneous Velocity. XLVI Mexican Conference on Biomedical Engineering. IFMBE Proceedings vol 96.
59-66,
Cham: Springer.
Memoria in extenso
17 - Bribiesca-Sanchez,A., Montoya,F., Gonzalez-Cota,A.L., Hernandez-Herrera,P., Darszon,A., Corkidi,G. (2023). Artifacts Generated by the 3D Rotation of a Freely-Swimming Human Sperm in the Measurement of Intracellular Ca2+. XLV Mexican Conference on Biomedical Engineering. CNIB 2022. IFMBE Proceedings, vol 86.
355-362,
Cham: Springer International Publishing.
Memoria in extenso
18 - Bribiesca,J., Montoya,F., Hernandez,P., Ramos,E., Corkidi,G. (2019). Metodología para el análisis 3D de la evaporación y sedimentación de una gota de agua. SOMI XXXIV Congreso de Instrumentación Morelia, Michoacán, México, 16 al 18 de octubre de 2019. .
Memoria in extenso
19 - Bribiesca-Sanchez,J.A., Montoya,F., Hernandez,P., Ramos,E., Corkidi,G. (2018). Sistema de microscopía tridimensional para muestreo rápido y Time Lapse simultáneamente. SOMI XXXIII Congreso de Instrumentación, Torreón, Coahuila, México, del 29 al 31 de Octubre de 2018.
Mexico: SOMI.
Memoria in extenso
20 - Hernandez-Herrera, P., Montoya, F., Rendon, J. M., Darszon, A., Corkidi, G. (2017). Sperm Flagellum Center-Line Tracing in Fluorescence 3D+t Low SNR Stacks Using an Iterative Minimal Path Method. Image Analysis and Recognition: 14th International Conference, ICIAR 2017, Montreal, QC, Canada, July 5-7, 2017, Proceedings.
Lecture Notes in Computer Science book series ,
437-445,
Cham.
Memoria in extenso
21 - Hernandez-Herrera,P., Papadakis,M., Kakadiaris,I.A. (2014). Segmentation of neurons based on one-class classification. 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014.
1316-1319.
*
Internacional
22 - Hernandez-Herrera,P., Jimenez,D., Kakadiaris,I.A., Koutsogiannis,A., Labate,D., Laezza,F., Papadakis,M. (2013). A Harmonic Analysis View on Neuroscience Imaging. Excursions in Harmonic Analysis, Volume 2.
Applied and Numerical Harmonic Analysis,
423-450.
*
Preprint
23 - Hernandez,H.O., Montoya,F., Hernandez-Herrera,P., Diaz-Guerrero,D.S., Olveres,J., Darszon,A., Escalante,B., Corkidi,G. (2023). Feature-Based 3D+t Descriptors of Hyperactivated Human Sperm Beat Patterns.
bioRxiv,
Preprint posted April 21.
Preprint
24 - Alva,A., Brito-Alarcon,E., Linares,A., Hernandez,H.O., Pinto-Camara,R., Martinez,D., Hernandez-Herrera,P., D'Antuono,R., Wood,C., Guerrero,A. (2022). Fluorescence fluctuation based super resolution microscopy, basic concepts for an easy start.
bioRxiv,
Preprint posted May 06.
Preprint
25 - Corkidi,G., Montoya,F., Gonzalez-Cota,A.L., Hernandez-Herrera,P., Bruce,N.C., Bloomfield-Gadelha,H., Darszon,A. (2022). The human sperm head spins with a conserved direction during swimming in 3D.
bioRxiv,
Preprint posted November 29,
2022.
memoria in extenso
26 - Hernandez,H.O., Hernandez-Herrera,P., Montoya,F., Olveres,J., Bloomfield-Gadelha,H., Darszon,A., Escalante-Ramirez,B., Corkidi,G. (2022). 3D+t feature-based descriptor for unsupervised flagellar human sperm beat classification.
Annual International Conference of the IEEE Engineering in Medicine and Biology Society,
2022,
488-492.
Memoria in extenso
27 - Bribiesca,A., Montoya,F., Hernandez,P., Ramos,E., Corkidi,G. (2021). Análisis de la dinámica tridimensional de evaporación de gotas sésiles de interés biomédico.
Memorias Del Congreso Nacional De Ingeniería Biomédica,
8 (1),
69-72.
Preprint
28 - Corkidi,G., Hernandez-Herrera,P., Montoya,F., Gadelha,H., Darszon,A. (2020). Computer-assisted segmentation-free analysis for long-term assessment of flagellar beating in free swimming human spermatozoa: the role of emptying calcium stores.
bioRxiv,
Preprint posted July 15,
2020.
Preprint
29 - Gadelha,H., Hernandez-Herrera,P., Montoya,F., Darszon,A., Corkidi,G. (2019). The human sperm beats anisotropically and asymmetrically in 3D.
bioRxiv,
Preprint posted October 05, 2019,
795245.
Artículo
30 - Hernandez,H.O., Montoya,F., Hernandez-Herrera,P., Diaz-Guerrero,D.S., Olveres,J., Bloomfield-Gadelha,H., Darszon,A., Escalante-Ramirez,B., Corkidi,G.. Feature-Based 3D+t Descriptors of Hyperactivated Human Sperm Beat Patterns.
Heliyon,
10 (5),
e26645.
Memoria in extenso
31 - Diaz-Guerrero,D.S., Montoya,F., Hernandez,H.O., Hernandez-Herrera,P., Darszon,A., Corkidi,G.. Computation of Human-Sperm Local Flagellar Instantaneous Velocity. XLVI Mexican Conference on Biomedical Engineering. IFMBE Proceedings vol 96.
59-66,
Cham: Springer.
Artículo
32 - Corkidi,G., Montoya,F., Gonzalez-Cota,A.L., Hernandez-Herrera,P., Bruce,N.C., Bloomfield-Gadelha,H., Darszon,A.. Human sperm rotate with a conserved direction during free swimming in four dimensions .
Journal of Cell Science,
136 (22),
jcs.261306.
Artículo
33 - Hernandez-Herrera,P., Abonza,V., Sanchez-Contreras,J., Darszon,A., Guerrero,A.. Deep Learning-Based Classification and Segmentation of Sperm head and flagellum for Image-Based Flow Cytometry.
Computacion y Sistemas,
27 (4),
1133-1145.
Memoria in extenso
34 - Bribiesca-Sanchez,A., Montoya,F., Gonzalez-Cota,A.L., Hernandez-Herrera,P., Darszon,A., Corkidi,G.. Artifacts Generated by the 3D Rotation of a Freely-Swimming Human Sperm in the Measurement of Intracellular Ca2+. XLV Mexican Conference on Biomedical Engineering. CNIB 2022. IFMBE Proceedings, vol 86.
355-362,
Cham: Springer International Publishing.
Preprint
35 - Hernandez,H.O., Montoya,F., Hernandez-Herrera,P., Diaz-Guerrero,D.S., Olveres,J., Darszon,A., Escalante,B., Corkidi,G.. Feature-Based 3D+t Descriptors of Hyperactivated Human Sperm Beat Patterns.
bioRxiv,
Preprint posted April 21.
Artículo
36 - Alva,A., Brito-Alarcon,E., Linares,A., Torres-Garcia,E., Hernandez,H.O., Pinto-Camara,R., Martinez,D., Hernandez-Herrera,P., D'Antuono,R., Wood,C., Guerrero,A.. Fluorescence fluctuation based super resolution microscopy, basic concepts for an easy start.
Journal of Microscopy,
288 (3),
218-241.
Artículo
37 - De Leon-Rodriguez,S.G., Hernandez-Herrera,P., Aguilar-Flores,C., Perez-Koldenkova,V., Guerrero,A., Mantilla,A., Fuentes-Panana,E.M., Wood,C., Bonifaz,L.C.. A Machine Learning Workflow of Multiplexed Immunofluorescence Images to Interrogate Activator and Tolerogenic Profiles of Conventional Type 1 Dendritic Cells Infiltrating Melanomas of Disease-Free and Metastatic Patients.
Journal of Oncology,
2022,
9775736.
Artículo
38 - Hernandez-Herrera,P., Ugartechea-Chirino,Y., Torres-Martinez,H.H., Arzola,A.V., Chairez-Veloz,J.E., Garcia-Ponce,B., de la Paz Sanchez,M., Garay-Arroyo,A., Alvarez-Buylla,E.R., Dubrovsky,J.G., Corkidi,G.. Live Plant Cell Tracking: Fiji plugin to analyze cell proliferation dynamics and understand morphogenesis.
Plant Physiology,
188 (2),
846-860.
Preprint
39 - Alva,A., Brito-Alarcon,E., Linares,A., Hernandez,H.O., Pinto-Camara,R., Martinez,D., Hernandez-Herrera,P., D'Antuono,R., Wood,C., Guerrero,A.. Fluorescence fluctuation based super resolution microscopy, basic concepts for an easy start.
bioRxiv,
Preprint posted May 06.
Preprint
40 - Corkidi,G., Montoya,F., Gonzalez-Cota,A.L., Hernandez-Herrera,P., Bruce,N.C., Bloomfield-Gadelha,H., Darszon,A.. The human sperm head spins with a conserved direction during swimming in 3D.
bioRxiv,
Preprint posted November 29,
2022.
memoria in extenso
41 - Hernandez,H.O., Hernandez-Herrera,P., Montoya,F., Olveres,J., Bloomfield-Gadelha,H., Darszon,A., Escalante-Ramirez,B., Corkidi,G.. 3D+t feature-based descriptor for unsupervised flagellar human sperm beat classification.
Annual International Conference of the IEEE Engineering in Medicine and Biology Society,
2022,
488-492.
Artículo
42 - Corkidi,G., Hernandez-Herrera,P, Montoya,F., Gadelha,H., Darszon,A.. Long-term segmentation-free assessment of head-flagellum movement and intracellular calcium in swimming human sperm.
Journal of Cell Science,
134 (3),
jcs250654.
Revisión
43 - Mata-Martinez,E., Sanchez-Cardenas,C., Chavez,J.C., Guerrero,A., Trevino,C.L., Corkidi,G., Montoya,F., Hernandez-Herrera,P., Buffone,M.G., Balestrini,P.A., Darszon,A.. Role of calcium oscillations in sperm physiology.
Biosystems,
209,
104524 [correction 104546].
Memoria in extenso
44 - Bribiesca,A., Montoya,F., Hernandez,P., Ramos,E., Corkidi,G.. Análisis de la dinámica tridimensional de evaporación de gotas sésiles de interés biomédico.
Memorias Del Congreso Nacional De Ingeniería Biomédica,
8 (1),
69-72.
Artículo
45 - Bribiesca,A., Montoya,F., Hernandez,P., Ramos,E., Corkidi,G.. Device for experimental characterization of the 4D flow inside an evaporating sessile water droplet.
Review of Scientific Instruments,
91 (1),
016101.
Artículo
46 - Gadelha,H., Hernandez-Herrera,P., Montoya,F., Darszon,A., Corkidi,G.. Human sperm uses asymmetric and anisotropic flagellar controls to regulate swimming symmetry and cell steering.
Science Advances,
6 (31),
eaba5168,
[Retraction vol 7 (21) eaau9116] .
Artículo
47 - Torres-Martinez,H.H., Hernandez-Herrera,P, Corkidi,G, Dubrovsky,J.G. From one cell to many: Morphogenetic field of lateral root founder cells in Arabidopsis thaliana is built by gradual recruitment.
Proceedings of the National Academy of Sciences,
117 (34),
20943-20949.
Preprint
48 - Corkidi,G., Hernandez-Herrera,P., Montoya,F., Gadelha,H., Darszon,A.. Computer-assisted segmentation-free analysis for long-term assessment of flagellar beating in free swimming human spermatozoa: the role of emptying calcium stores.
bioRxiv,
Preprint posted July 15,
2020.
Memoria in extenso
49 - Bribiesca,J., Montoya,F., Hernandez,P., Ramos,E., Corkidi,G.. Metodología para el análisis 3D de la evaporación y sedimentación de una gota de agua. SOMI XXXIV Congreso de Instrumentación Morelia, Michoacán, México, 16 al 18 de octubre de 2019. .
Preprint
50 - Gadelha,H., Hernandez-Herrera,P., Montoya,F., Darszon,A., Corkidi,G.. The human sperm beats anisotropically and asymmetrically in 3D.
bioRxiv,
Preprint posted October 05, 2019,
795245.
Artículo
51 - Hernandez-Herrera, P., Montoya, F., Rendon-Mancha, J.M., Darszon, A., Corkidi, G.. 3D+t Human Sperm Flagellum Tracing in low SNR Fluorescence Images.
IEEE Transactions on Medical Imaging,
37 (10),
2236-2247.
Memoria in extenso
52 - Bribiesca-Sanchez,J.A., Montoya,F., Hernandez,P., Ramos,E., Corkidi,G.. Sistema de microscopía tridimensional para muestreo rápido y Time Lapse simultáneamente. SOMI XXXIII Congreso de Instrumentación, Torreón, Coahuila, México, del 29 al 31 de Octubre de 2018.
Mexico: SOMI.
Artículo
53 - Singh, P.K., Hernandez-Herrera, P., Labate, D., Papadakis, M.. Automated 3-D Detection of Dendritic Spines from In Vivo Two-Photon Image Stacks.
Neuroinformatics,
15 (4),
303-319.
Memoria in extenso
54 - Hernandez-Herrera, P., Montoya, F., Rendon, J. M., Darszon, A., Corkidi, G.. Sperm Flagellum Center-Line Tracing in Fluorescence 3D+t Low SNR Stacks Using an Iterative Minimal Path Method. Image Analysis and Recognition: 14th International Conference, ICIAR 2017, Montreal, QC, Canada, July 5-7, 2017, Proceedings.
Lecture Notes in Computer Science book series ,
437-445,
Cham.
Artículo
55 - Hernandez-Herrera,P., Papadakis,M., Kakadiaris,I.A.. Multi-Scale Segmentation of Neurons Based on One-Class Classification.
Journal of Neuroscience Methods,
266,
94-106.
*
Artículo
56 - Santamaria-Pang,A., Hernandez-Herrera,P., Papadakis,M., Saggau,P., Kakadiaris,I.A.. Automatic Morphological Reconstruction of Neurons from Multiphoton and Confocal Microscopy Images Using 3D Tubular Models.
Neuroinformatics,
13 (3),
297-320.
*
Memoria in extenso
57 - Hernandez-Herrera,P., Papadakis,M., Kakadiaris,I.A.. Segmentation of neurons based on one-class classification. 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014.
1316-1319.
*
Internacional
58 - Hernandez-Herrera,P., Jimenez,D., Kakadiaris,I.A., Koutsogiannis,A., Labate,D., Laezza,F., Papadakis,M.. A Harmonic Analysis View on Neuroscience Imaging. Excursions in Harmonic Analysis, Volume 2.
Applied and Numerical Harmonic Analysis,
423-450.
*