Dr. Jaime Arturo Pimentel Cabrera
Técnico Académico Titular A Tiempo Completo
Nivel D del PRIDE
Nivel I del SNII
Nivel I del SNII
Total de publicaciones: 19
- Tipo
- Fecha
Artículo
1 - Fukumoto-Inukai,A.K., Bermeo,K., Arenas,I., Rosendo-Pineda,M.J., Pimentel-Cabrera,J.A., Garcia,D.E. (2024). AMPK inhibits voltage-gated calcium channel-current in rat chromaffin cells.
Molecular and Cellular Endocrinology,
591,
112275.
Artículo
2 - Sanchez-Jaramillo,E., Wittmann,G., Menyhert,J., Singru,P., Gomez-Gonzalez,G.B., Sanchez-Islas,E., Yanez-Recendis,N., Pimentel-Cabrera,J.A., Leon-Olea,M., Gereben,B., Fekete,C., Charli,J.L., Lechan,R.M. (2022). Origin of thyrotropin-releasing hormone neurons that innervate the tuberomammillary nuclei.
Brain structure & function,
227,
2329-2347.
Note
3 - Hammer,M., Huisman,M., Rigano,A., Boehm,U., Chambers,J.J., Gaudreault,N., North,A.J., Pimentel,J.A., Sudar,D., Bajcsy,P., Brown,C.M., Corbett,A.D., Faklaris,O., Lacoste,J., Laude,A., Nelson,G., Nitschke,R., Farzam,F., Smith,C.S., Grunwald,D., Strambio-De-Castillia,C. (2021). Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.
Nature Methods,
18,
1427-1440 [correction 3 Jan 2022].
Artículo
4 - Hidalgo,P., Pimentel,A., Mojica-Santamaria,D., von Stromberg,K., Hofmann-Sieber,H., Lona-Arrona,C., Dobner,T., Gonzalez,R.A. (2021). Evidence that the adenovirus single-stranded DNA binding protein mediates the assembly of biomolecular condensates to form viral replication compartments.
Viruses,
13 (9),
1778.
Artículo
5 - Nelson,G., Boehm,U., Bagley,S., Bajcsy,P., Bischof,J., Brown,C.M., Dauphin,A., Dobbie,I.M., Eriksson,J.E., Faklaris,O., Fernandez-Rodriguez,J., Ferrand,A., Gelman,L., Gheisari,A., Hartmann,H., Kukat,C., Laude,A., Mitkovski,M., Munck,S., North,A.J., Rasse,T.M., Resch-Genger,U., Schuetz,L.C., Seitz,A., Strambio-De-Castillia,C., Swedlow,J.R., Alexopoulos,I., Aumayr,K., Avilov,S., Bakker,G.J., Bammann,R.R., Bassi,A., Beckert,H., Beer,S., Belyaev,Y., Bierwagen,J., Birngruber,K.A., Bosch,M., Breitlow,J., Cameron,L.A., Chalfoun,J., Chambers,J.J., Chen,C.L., Conde-Sousa,E., Corbett,A.D., Cordelieres,F.P., Nery,E.D., Dietzel,R., Eismann,F., Fazeli,E., Felscher,A., Fried,H., Gaudreault,N., Goh,W.I., Guilbert,T., Hadleigh,R., Hemmerich,P., Holst,G.A., Itano,M.S., Jaffe,C.B., Jambor,H.K., Jarvis,S.C., Keppler,A., Kirchenbuechler,D., Kirchner,M., Kobayashi,N., Krens,G., Kunis,S., Lacoste,J., Marcello,M., Martins,G.G., Metcalf,D.J., Mitchell,C.A., Moore,J., Mueller,T., Nelson,M.S., Ogg,S., Onami,S., Palmer,A.L., Paul-Gilloteaux,P., Pimentel,J.A., Plantard,L., Podder,S., Rexhepaj,E., Royon,A., Saari,M.A., Schapman,D., Schoonderwoert,V., Schroth-Diez,B., Schwartz,S., Shaw,M., Spitaler,M., Stoeckl,M.T., Sudar,D., Teillon,J., Terjung,S., Thuenauer,R., Wilms,C.D., Wright,G.D., Nitschke,R. (2021). QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy.
Journal of Microscopy,
284 (1),
56-73.
Note
6 - Rigano,A., Ehmsen,S., Ozturk,S.U., Ryan,J., Balashov,A., Hammer,M., Kirli,K., Bellve,K., Boehm,U., Brown,C.M., Chambers,J.J., Coleman,R.A., Cosolo,A., Faklaris,O., Fogarty,K., Guilbert,T., Hamacher,A.B., Itano,M.S., Keeley,D.P., Kunis,S., Lacoste,J., Laude,A., Ma,W., Marcello,M., Montero-Llopis,P., Nelson,G., Nitschke,R., Pimentel,J.A., Weidtkamp-Peters,S., Park,P.J., Alver,B., Grunwald,D., Strambio-De-Castillia,C. (2021). Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications.
Nature Methods,
18,
1489-1495.
Artículo
7 - Lopez-Damian, E.P., Jimenez-Medina, J.A., Lammoglia, M.A., Pimentel, J.A., Agredano-Moreno, L.T., Wood, C., Galina, C.S., Fiordelisio, T. (2018). Lipid droplets in clusters negatively affect Bos indicus embryos during cryopreservation.
Anatomia, Histologia, Embryologia,
47 (5),
435-443.
Artículo
8 - Pacheco-Escobedo,M.A., Ivanov,V.B., Ransom-Rodriguez,I., Arriaga-Mejia,G., Avila,H., Baklanov,I.A., Pimentel,A., Corkidi,G., Doerner,P., Dubrovsky,J.G., Alvarez-Buylla,E.R., Garay-Arroyo,A. (2016). Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
Annals of Botany,
118 (4),
763-776.
Artículo
9 - Medina-Andres,R., Solano-Peralta,A., Saucedo-Vazquez,J.P., Napsucialy-Mendivil,S., Pimentel-Cabrera,J.A., Sosa-Torres,M.E., Dubrovsky,J.G., Lira-Ruan,V. (2015). The Nitric Oxide Production in the Moss Physcomitrella patens Is Mediated by Nitrate Reductase.
PLoS ONE,
10 (3),
e0119400.
Artículo
10 - Wucherpfennig,T., Schulz,A., Pimentel,J.A., Corkidi,G., Sieblitz,D., Pump,M., Gorr,G., Schutte,K., Wittmann,C., Krull,R. (2014). Viability characterization of Taxus chinensis plant cell suspension cultures by rapid colorimetric- and image analysis-based techniques.
Bioprocess and Biosystems Engineering,
37 (9),
1799-1808.
Artículo
11 - Corkidi,G., Rojas,A., Pimentel,A., Galindo,E. (2012). Visualization of compound drops formation in multiphase processes for the identification of factors influencing bubble and water droplet inclusions in oil drops.
Chemical Engineering Research & Design,
90 (11),
1727-1738.
Artículo
12 - Pimentel,J.A., Carneiro,J., Darszon,A., Corkidi,G. (2012). A segmentation algorithm for automated tracking of fast swimming unlabelled cells in three dimensions.
Journal of Microscopy,
245 (1),
72-81.
Revisión
13 - Guerrero,A., Carneiro,J., Pimentel,A., Wood,C.D., Corkidi,G., Darszon,A. (2011). Strategies for locating the female gamete: the importance of measuring sperm trajectories in three spatial dimensions.
Molecular Human Reproduction,
17 (8),
511-523.
Memoria in extenso
14 - Silva-Villalobos,F., Pimentel,J.A., Darszon,A., Corkidi,G. (2014). Imaging of the 3D dynamics of flagellar beating in human sperm. Engineering in Medicine and Biology Society (EMBC), 2014 36th Annual International Conference of the IEEE.
Conf Proc IEEE Eng Med Biol Soc,
190-193,
2014.
Preprint
15 - Bialy,N., Alber,F., Andrews,B., Angelo,M., Beliveau,B., Bintu,L., Boettiger,A., Boehm,U., Brown,C.M., Maina,M.B., Chambers,J.J., Cimini,B.A., Eliceiri,K., Errington,R., Faklaris,O., Gaudreault,N., Germain,R.N., Goscinski,W., Grunwald,D., Halter,M., Hanein,D., Hickey,J.W., Lacoste,J., Laude,A., Lundberg,E., Ma,J., Malacrida,L., Moore,J., Nelson,G., Neumann,E.K., Nitschke,R., Onami,S., Pimentel,J.A., Plant,A.L., Radtke,A.J., Sabata,B., Schapiro,D., Schoneberg,J., Spraggins,J.M., Sudar,D., Vierdag,W.A.M., Volkmann,N., Wahlby,C., Wang,S.S., Yaniv,Z., Strambio-De-Castillia,C. (2024). Harmonizing the Generation and Pre-publication Stewardship of FAIR bioimage data.
ArXiv,
Preprint posted 30 August.
Protocolo
16 - Gaudreault,N., Ali,R., Avilov,S.I., Pimentel-Cabrera,J.A., et.al. (2023). Illumination Power, Stability, and Linearity Measurements for Confocal and Widefield Microscopes V.2.
Protocols.io.
Preprint
17 - Hammer,M., Huisman,M., Rigano,A., Boehm,U., Chambers,J.J., Gaudreault,N., North,A.J., Pimentel,J.A., Sudar,D., Bajcsy,P., Brown,C.M., Corbett,A.D., Faklaris,O., Lacoste,J., Laude,A., Nelson,G., Nitschke,R., Farzam,F., Smith,C., Grunwald,D., Strambio-De-Castillia,C. (2021). Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.
bioRxiv,
Preprint posted April 26, 2021.
preprint
18 - Rigano,A., Ehmsen,S., Ozturk,S.U., Ryan,J., Balashov,A., Hammer,M., Kirli,K., Bellve,K., Boehm,U., Brown,C.M., Chambers,J.J., Coleman,R.A., Cosolo,A., Faklaris,O., Fogarty,K., Guilbert,T., Hamacher,A.B., Itano,M.S., Keeley,D.P., Kunis,S., Lacoste,J., Laude,A., Ma,W., Marcello,M., Montero-Llopis,P., Nelson,G., Nitschke,R., Pimentel,J.A., Weidtkamp-Peters,S., Park,P.J., Alver,B., Grunwald,D., Strambio-De-Castillia,C. (2021). Micro-Meta App: an interactive software tool to facilitate the collection of microscopy metadata based on community-driven specifications.
bioRxiv,
Preprint posted May 31.
19 - Pimentel Cabrera, Jaime Arturo (2013). Sistema de rastreo tridimensional de micro-partículas : aplicación en el rastreo de espermatozoides al nado libre .
Doctorado en Ciencia e Ingeniería de la Computación,
UNAM.
*
Asesor: Corkidi Blanco, Gabriel
Artículo
20 - Fukumoto-Inukai,A.K., Bermeo,K., Arenas,I., Rosendo-Pineda,M.J., Pimentel-Cabrera,J.A., Garcia,D.E.. AMPK inhibits voltage-gated calcium channel-current in rat chromaffin cells.
Molecular and Cellular Endocrinology,
591,
112275.
Preprint
21 - Bialy,N., Alber,F., Andrews,B., Angelo,M., Beliveau,B., Bintu,L., Boettiger,A., Boehm,U., Brown,C.M., Maina,M.B., Chambers,J.J., Cimini,B.A., Eliceiri,K., Errington,R., Faklaris,O., Gaudreault,N., Germain,R.N., Goscinski,W., Grunwald,D., Halter,M., Hanein,D., Hickey,J.W., Lacoste,J., Laude,A., Lundberg,E., Ma,J., Malacrida,L., Moore,J., Nelson,G., Neumann,E.K., Nitschke,R., Onami,S., Pimentel,J.A., Plant,A.L., Radtke,A.J., Sabata,B., Schapiro,D., Schoneberg,J., Spraggins,J.M., Sudar,D., Vierdag,W.A.M., Volkmann,N., Wahlby,C., Wang,S.S., Yaniv,Z., Strambio-De-Castillia,C.. Harmonizing the Generation and Pre-publication Stewardship of FAIR bioimage data.
ArXiv,
Preprint posted 30 August.
Protocolo
22 - Gaudreault,N., Ali,R., Avilov,S.I., Pimentel-Cabrera,J.A., et.al.. Illumination Power, Stability, and Linearity Measurements for Confocal and Widefield Microscopes V.2.
Protocols.io.
Artículo
23 - Sanchez-Jaramillo,E., Wittmann,G., Menyhert,J., Singru,P., Gomez-Gonzalez,G.B., Sanchez-Islas,E., Yanez-Recendis,N., Pimentel-Cabrera,J.A., Leon-Olea,M., Gereben,B., Fekete,C., Charli,J.L., Lechan,R.M.. Origin of thyrotropin-releasing hormone neurons that innervate the tuberomammillary nuclei.
Brain structure & function,
227,
2329-2347.
Note
24 - Hammer,M., Huisman,M., Rigano,A., Boehm,U., Chambers,J.J., Gaudreault,N., North,A.J., Pimentel,J.A., Sudar,D., Bajcsy,P., Brown,C.M., Corbett,A.D., Faklaris,O., Lacoste,J., Laude,A., Nelson,G., Nitschke,R., Farzam,F., Smith,C.S., Grunwald,D., Strambio-De-Castillia,C.. Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.
Nature Methods,
18,
1427-1440 [correction 3 Jan 2022].
Artículo
25 - Hidalgo,P., Pimentel,A., Mojica-Santamaria,D., von Stromberg,K., Hofmann-Sieber,H., Lona-Arrona,C., Dobner,T., Gonzalez,R.A.. Evidence that the adenovirus single-stranded DNA binding protein mediates the assembly of biomolecular condensates to form viral replication compartments.
Viruses,
13 (9),
1778.
Artículo
26 - Nelson,G., Boehm,U., Bagley,S., Bajcsy,P., Bischof,J., Brown,C.M., Dauphin,A., Dobbie,I.M., Eriksson,J.E., Faklaris,O., Fernandez-Rodriguez,J., Ferrand,A., Gelman,L., Gheisari,A., Hartmann,H., Kukat,C., Laude,A., Mitkovski,M., Munck,S., North,A.J., Rasse,T.M., Resch-Genger,U., Schuetz,L.C., Seitz,A., Strambio-De-Castillia,C., Swedlow,J.R., Alexopoulos,I., Aumayr,K., Avilov,S., Bakker,G.J., Bammann,R.R., Bassi,A., Beckert,H., Beer,S., Belyaev,Y., Bierwagen,J., Birngruber,K.A., Bosch,M., Breitlow,J., Cameron,L.A., Chalfoun,J., Chambers,J.J., Chen,C.L., Conde-Sousa,E., Corbett,A.D., Cordelieres,F.P., Nery,E.D., Dietzel,R., Eismann,F., Fazeli,E., Felscher,A., Fried,H., Gaudreault,N., Goh,W.I., Guilbert,T., Hadleigh,R., Hemmerich,P., Holst,G.A., Itano,M.S., Jaffe,C.B., Jambor,H.K., Jarvis,S.C., Keppler,A., Kirchenbuechler,D., Kirchner,M., Kobayashi,N., Krens,G., Kunis,S., Lacoste,J., Marcello,M., Martins,G.G., Metcalf,D.J., Mitchell,C.A., Moore,J., Mueller,T., Nelson,M.S., Ogg,S., Onami,S., Palmer,A.L., Paul-Gilloteaux,P., Pimentel,J.A., Plantard,L., Podder,S., Rexhepaj,E., Royon,A., Saari,M.A., Schapman,D., Schoonderwoert,V., Schroth-Diez,B., Schwartz,S., Shaw,M., Spitaler,M., Stoeckl,M.T., Sudar,D., Teillon,J., Terjung,S., Thuenauer,R., Wilms,C.D., Wright,G.D., Nitschke,R.. QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy.
Journal of Microscopy,
284 (1),
56-73.
Note
27 - Rigano,A., Ehmsen,S., Ozturk,S.U., Ryan,J., Balashov,A., Hammer,M., Kirli,K., Bellve,K., Boehm,U., Brown,C.M., Chambers,J.J., Coleman,R.A., Cosolo,A., Faklaris,O., Fogarty,K., Guilbert,T., Hamacher,A.B., Itano,M.S., Keeley,D.P., Kunis,S., Lacoste,J., Laude,A., Ma,W., Marcello,M., Montero-Llopis,P., Nelson,G., Nitschke,R., Pimentel,J.A., Weidtkamp-Peters,S., Park,P.J., Alver,B., Grunwald,D., Strambio-De-Castillia,C.. Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications.
Nature Methods,
18,
1489-1495.
Preprint
28 - Hammer,M., Huisman,M., Rigano,A., Boehm,U., Chambers,J.J., Gaudreault,N., North,A.J., Pimentel,J.A., Sudar,D., Bajcsy,P., Brown,C.M., Corbett,A.D., Faklaris,O., Lacoste,J., Laude,A., Nelson,G., Nitschke,R., Farzam,F., Smith,C., Grunwald,D., Strambio-De-Castillia,C.. Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.
bioRxiv,
Preprint posted April 26, 2021.
preprint
29 - Rigano,A., Ehmsen,S., Ozturk,S.U., Ryan,J., Balashov,A., Hammer,M., Kirli,K., Bellve,K., Boehm,U., Brown,C.M., Chambers,J.J., Coleman,R.A., Cosolo,A., Faklaris,O., Fogarty,K., Guilbert,T., Hamacher,A.B., Itano,M.S., Keeley,D.P., Kunis,S., Lacoste,J., Laude,A., Ma,W., Marcello,M., Montero-Llopis,P., Nelson,G., Nitschke,R., Pimentel,J.A., Weidtkamp-Peters,S., Park,P.J., Alver,B., Grunwald,D., Strambio-De-Castillia,C.. Micro-Meta App: an interactive software tool to facilitate the collection of microscopy metadata based on community-driven specifications.
bioRxiv,
Preprint posted May 31.
Artículo
30 - Lopez-Damian, E.P., Jimenez-Medina, J.A., Lammoglia, M.A., Pimentel, J.A., Agredano-Moreno, L.T., Wood, C., Galina, C.S., Fiordelisio, T.. Lipid droplets in clusters negatively affect Bos indicus embryos during cryopreservation.
Anatomia, Histologia, Embryologia,
47 (5),
435-443.
Artículo
31 - Pacheco-Escobedo,M.A., Ivanov,V.B., Ransom-Rodriguez,I., Arriaga-Mejia,G., Avila,H., Baklanov,I.A., Pimentel,A., Corkidi,G., Doerner,P., Dubrovsky,J.G., Alvarez-Buylla,E.R., Garay-Arroyo,A.. Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
Annals of Botany,
118 (4),
763-776.
Artículo
32 - Medina-Andres,R., Solano-Peralta,A., Saucedo-Vazquez,J.P., Napsucialy-Mendivil,S., Pimentel-Cabrera,J.A., Sosa-Torres,M.E., Dubrovsky,J.G., Lira-Ruan,V.. The Nitric Oxide Production in the Moss Physcomitrella patens Is Mediated by Nitrate Reductase.
PLoS ONE,
10 (3),
e0119400.
Artículo
33 - Wucherpfennig,T., Schulz,A., Pimentel,J.A., Corkidi,G., Sieblitz,D., Pump,M., Gorr,G., Schutte,K., Wittmann,C., Krull,R.. Viability characterization of Taxus chinensis plant cell suspension cultures by rapid colorimetric- and image analysis-based techniques.
Bioprocess and Biosystems Engineering,
37 (9),
1799-1808.
Memoria in extenso
34 - Silva-Villalobos,F., Pimentel,J.A., Darszon,A., Corkidi,G.. Imaging of the 3D dynamics of flagellar beating in human sperm. Engineering in Medicine and Biology Society (EMBC), 2014 36th Annual International Conference of the IEEE.
Conf Proc IEEE Eng Med Biol Soc,
190-193,
2014.
35 - Pimentel Cabrera, Jaime Arturo. Sistema de rastreo tridimensional de micro-partículas : aplicación en el rastreo de espermatozoides al nado libre .
Doctorado en Ciencia e Ingeniería de la Computación,
UNAM.
*
Asesor: Corkidi Blanco, Gabriel
Artículo
36 - Corkidi,G., Rojas,A., Pimentel,A., Galindo,E.. Visualization of compound drops formation in multiphase processes for the identification of factors influencing bubble and water droplet inclusions in oil drops.
Chemical Engineering Research & Design,
90 (11),
1727-1738.
Artículo
37 - Pimentel,J.A., Carneiro,J., Darszon,A., Corkidi,G.. A segmentation algorithm for automated tracking of fast swimming unlabelled cells in three dimensions.
Journal of Microscopy,
245 (1),
72-81.
Revisión
38 - Guerrero,A., Carneiro,J., Pimentel,A., Wood,C.D., Corkidi,G., Darszon,A.. Strategies for locating the female gamete: the importance of measuring sperm trajectories in three spatial dimensions.
Molecular Human Reproduction,
17 (8),
511-523.
- Teléfonos
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Oficina +52 (777) 329-1777 ext 38150.
desde la CDMX 562-27777 ext 38150
Red UNAM 38150