Dr. Cuauhtémoc Licona Cassani
Investigador Titular A Tiempo Completo
Análisis de diversidad genética, metabólica y microbiana de ambientes con aplicaciones biotecnológicas
Biología sintética
Bioprospección y descubrimiento de productos naturales en actinomicetos
Desarrollo de biosensores
Ingeniería metabólica
Doctorado, Dr. en Filosofía
* Indica publicación con otra institución de adscripción
Total de publicaciones: 64
- Tipo
- Fecha
Artículo
1 - Corona-Cervantes,K., Urrutia-Baca,V.H., Gamez-Valdez,J.S., Jimenez-Lopez,B., Rodriguez-Gutierrez,N.A., Chavez-Caraza,K., Espiricueta-Candelaria,F., Salas-Villalobos,U.A., Ramos-Parra,P.A., Gutierrez-Uribe,J.A., Brunck,M., Chuck-Hernandez,C., Licona-Cassani,C. (2026). Maternal obesity alters human milk oligosaccharides content and correlates with early acquisition of late colonizers in the neonatal gut microbiome.
Gut Microbes,
18 (1),
2607043.
Revisión in press
2 - Perez-Morales,G., Merino,E., Cevallos,M.A., Gosset,G., Licona-Cassani,C., Caspeta,L., Martinez,A. (2026). Toward a systems metabolic engineering approach to improve thermotolerance of Escherichia coli.
Microbial Cell Factories,
Mar 16 [Online ahead of print].
Artículo
3 - Alvarado-Pena,N., Munoz-Torrico,M., Narvaez-Diaz,L., Mejia-Ponce,P.M, Becerril-Vargas,E., Zuniga,J., Muniz-Salazar,R., Laniado-Laborin,R., Licona-Cassani,C., Soberon,X., Silva-Herzog,E. (2025). Mycobacterium tuberculosis genomic surveillance in Mexico. Characterization of variants in drug resistance and efflux pump genes.
Frontiers in Microbiology,
16,
1666838.
Artículo
4 - Elakkya,M., Gonzalez-Salazar,L.A., Lopez-Reyes,K., Rebelo-Romao,I., Sousa,A., Godde,V., Niehaus,K., Thenappan,D.P., Vilchez,J.I., Paul,S., Licona-Cassani,C. (2025). Comparative genomics and metabolomics reveal phytohormone production, nutrient acquisition, and osmotic stress tolerance in Azotobacter chroococcum W5.
Frontiers in Microbiology,
16,
1626016.
Artículo
5 - Gallardo-Camarena,M.V., Reverchon,F., Mendez-Bravo,A., Torres-Acosta,M.A., Licona-Cassani,C. (2025). Control of avocado anthracnose by carposphere-associated Kosakonia cowanii VG1 for agricultural applications.
AMB Express,
15 (1).
*
Artículo
6 - Gallardo-Camarena,M.V., Torres-Acosta,M.A., Licona-Cassani,C. (2025). Economic evaluation of large-scale production for Colletotrichum antagonists as biocontrol agents against anthracnose.
Journal of Chemical Technology and Biotechnology,
100 (5),
1117-1128.
*
Artículo
7 - Morey-Leon,G., Mejia-Ponce,P.M., Fernandez-Cadena,J.C, Garcia-Moreira,E., Andrade-Molina,D., Licona-Cassani,C., Fresia,P, Berna,L (2025). Global epidemiology of Mycobacterium tuberculosis lineage 4 insights from Ecuadorian genomic data.
Scientific Reports,
15 (1).
*
Artículo
8 - Ramos-de-la-Pena,A.M., Santana-Reynoso,A., Gonzalez-Valdez,J., Aguilar,O., Renard,C.M.G.C., Licona-Cassani,C. (2025). Influence of molar ratio and pH on physicochemical characteristics of genipin-derived pigments formed at cold and mild temperatures.
Food Chemistry Advances,
7,
100983.
*
Artículo
9 - Ramos-Garcia,A.A., Mejia-Ponce,P.M., Salem-Mojica,N., Santos-Diaz,A., Martinez-Ledesma,E., Licona-Cassani,C. (2025). FuNTB: a functional network clustering tool for the analysis of genome-wide genetic variants in Mycobacterium tuberculosis.
Bioinformatics,
41 (7),
btaf341.
Artículo
10 - Rodriguez-Orduna,L., Aguilar,C., Hernandez-Melgar,A.G., Arocha-Garza,H.F., Verdel-Aranda,K., Vazquez-Rodriguez,A., Lopez-Ribot,J.L., Moreno-Ulloa,A., Licona-Cassani,C. (2025). Biodiscovery of Actinomycetota through metabolo-genomics reveals functional diversity across contrasting Mexican ecosystems.
Microbial Genomics,
11 (10),
001557 [corrigendum vol 12 (2)].
Artículo
11 - Salazar-Garcia,L.M., Damas-Ramos,L.C., Trejo-Alarcon,L.M., Rago,D., Ahonen,L., Cruz-Morales,P., Ponce-Noyola,P., Licona-Cassani,C. (2025). CRISPR-driven enhanced hydrocarbon emulsification in an environmental Pseudomonas aeruginosa strain.
Microbial Cell Factories,
24 (1),
151.
Artículo
12 - Trejo-Alarcon,L.M., Cano-Prieto,C., Calheiros de Carvalho,A., Rago,D., Ahonen,L., Cruz-Morales,P., Licona-Cassani,C. (2025). Integrative metabolo-genomics suggests a biosynthetic pathway for tetrangulol in Streptomyces sp. KL110A.
World Journal of Microbiology & Biotechnology,
41 (3).
*
Artículo
13 - Trejo-Alarcon,L.M., Cruz-Morales,P., Licona-Cassani,C. (2025). Draft genome sequence of Streptomyces sp. CC302I with non-canonical biosynthetic gene clusters for codon-readthrough activity.
Microbiology Resource Announcements,
14 (2).
*
Artículo
14 - Zdouc,M.M., Blin,K., Louwen,N.L.L., Navarro,J., Loureiro,C., Bader,C.D., Bailey,C.B., Barra,L., Booth,T.J., Bozhuyuk,K.A.J., Cediel-Becerra,J.D.D., Charlop-Powers,Z., Chevrette,M.G., Chooi,Y.H., D'Agostino,P.M., de Rond T., Del Pup E., Duncan,K.R., Gu,W., Hanif,N., Helfrich,E.J.N., Jenner,M., Katsuyama,Y., Korenskaia,A., Krug,D., Libis,V., Lund,G.A., Mantri,S., Morgan,K.D., Owen,C., Phan,C.S., Philmus,B., Reitz,Z.L., Robinson,S.L., Singh,K.S., Teufel,R., Tong,Y., Tugizimana,F., Ulanova,D., Winter,J.M., Aguilar,C., Akiyama,D.Y., Al-Salihi,S.A.A., Alanjary,M., Alberti,F., Aleti,G., Alharthi,S.A., Rojo,M.Y.A., Arishi,A.A., Augustijn,H.E., Avalon,N.E., Avelar-Rivas,J.A., Axt,K.K., Barbieri,H.B., Barbosa,J.C.J., Barboza Segato,L.G., Barrett,S.E., Baunach,M., Beemelmanns,C., Beqaj,D., Berger,T., Bernaldo-Aguero,J., Bettenbuhl,S.M., Bielinski,V.A., Biermann,F., Borges,R.M., Borriss,R., Breitenbach,M., Bretscher,K.M., Brigham,M.W., Buedenbender,L., Bulcock,B.W., Cano-Prieto,C., Capela,J., Carrion,V.J., Carter,R.S., Castelo-Branco,R., Castro-Falcon,G., Chagas,F.O., Charria-Giron,E., Chaudhri,A.A., Chaudhry,V., Choi,H., Choi,Y., Choupannejad,R., Chromy,J., Donahey,M.S.C., Collemare,J., Connolly,J.A., Creamer,K.E., Crusemann,M., Cruz,A.A., Cumsille,A., Dallery,J.F., Damas-Ramos,L.C., Damiani,T., de Kruijff M., Martin,B.D., Sala,G.D., Dillen,J., Doering,D.T., Dommaraju,S.R., Durusu,S., Egbert,S., Ellerhorst,M., Faussurier,B., Fetter,A., Feuermann,M., Fewer,D.P., Foldi,J., Frediansyah,A., Garza,E.A., Gavriilidou,A., Gentile,A., Gerke,J., Gerstmans,H., Gomez-Escribano,J.P., Gonzalez-Salazar,L.A., Grayson,N.E., Greco,C., Gomez,J.E.G., Guerra,S., Flores,S.G., Gurevich,A., Gutierrez-Garcia,K., Hart,L., Haslinger,K., He,B., Hebra,T., Hemmann,J.L., Hindra,H., Hoing,L., Holland,D.C., Holme,J.E., Horch,T., Hrab,P., Hu,J., Huynh,T.H., Hwang,J.Y., Iacovelli,R., Iftime,D., Iorio,M., Jayachandran,S., Jeong,E., Jing,J., Jung,J.J., Kakumu,Y., Kalkreuter,E., Kang,K.B., Kang,S., Kim,W., Kim,G.J., Kim,H., Kim,H.U., Klapper,M., Koetsier,R.A., Kollten,C., Kovacs,A.T., Kriukova,Y., Kubach,N., Kunjapur,A.M., Kushnareva,A.K., Kust,A., Lamber,J., Larralde,M., Larsen,N.J., Launay,A.P., Le,N.T., Lebeer,S., Lee,B.T., Lee,K., Lev,K.L., Li,S.M., Li,Y.X., Licona-Cassani,C., Lien,A., Liu,J., Lopez,J.A.V., Machushynets,N.V., Macias,M.I., Mahmud,T., Maleckis,M., Martinez-Martinez,A.M., Mast,Y., Maximo,M.F., McBride,C.M., McLellan,R.M., Bhatt,K.M., Melkonian,C., Merrild,A., Metsa-Ketela,M., Mitchell,D.A., Muller,A.V., Nguyen,G.S., Nguyen,H.T., Niedermeyer,T.H.J., O'Hare,J.H., Ossowicki,A., Ostash,B.O., Otani,H., Padva,L., Paliyal,S., Pan,X., Panghal,M., Parade,D.S., Park,J., Parra,J., Rubio,M.P., Pham,H.T., Pidot,S.J., Piel,J., Pourmohsenin,B., Rakhmanov,M., Ramesh,S., Rasmussen,M.H., Rego,A., Reher,R., Rice,A.J., Rigolet,A., Romero-Otero,A., Rosas-Becerra,L.R., Rosiles,P.Y., Rutz,A., Ryu,B., Sahadeo,L.A., Saldanha,M., Salvi,L., Sanchez-Carvajal,E., Santos-Medellin,C., Sbaraini,N., Schoellhorn,S.M., Schumm,C., Sehnal,L., Selem,N., Shah,A.D., Shishido,T.K., Sieber,S., Silviani,V., Singh,G., Singh,H., Sokolova,N., Sonnenschein,E.C., Sosio,M., Sowa,S.T., Steffen,K., Stegmann,E., Streiff,A.B., Struder,A., Surup,F., Svenningsen,T., Sweeney,D., Szenei,J., Tagirdzhanov,A., Tan,B., Tarnowski,M.J. (2025). MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration.
Nucleic Acids Research,
53 (D1),
gkae1115,
D678-D690.
Artículo
15 - Aguilar,C., Alwali,A., Mair,M., Rodriguez-Orduna,L., Contreras-Peruyero,H., Modi,R., Roberts,C., Selem-Mojica,N., Licona-Cassani,C., Parkinson,E.I. (2024). Actinomycetota bioprospecting from ore-forming environments.
Microbial Genomics,
10 (5),
001253.
*
Artículo
16 - Alwali,A.Y., Santos,D., Aguilar,C., Birch,A., Rodriguez-Ordunea,L., Roberts,C.B., Modi,R., Licona-Cassani,C., Parkinson,E.I. (2024). Discovery of Streptomyces species CS-62, a novel producer of the Acinetobacter baumannii selective antibiotic factumycin.
Journal of Industrial Microbiology & Biotechnology,
51,
kuae014.
*
Artículo
17 - Bermudez-Hernandez,G.A., Perez-Martinez,D., Ortiz-Leon,M.C., Muniz-Salazar,R., Licona-Cassani,C., Zenteno-Cuevas,R. (2024). Mutational Dynamics Related to Antibiotic Resistance in M. tuberculosis Isolates from Serial Samples of Patients with Tuberculosis and Type 2 Diabetes Mellitus.
Microorganisms,
12 (2).
*
Artículo
18 - Contreras-Peruyero,H., Guerrero-Flores,S., Zirion-Martinez,C., Mejia-Ponce,P.M., Navarro-Miranda,M., Lovaco-Flores,J.A., Ibarra-Rodriguez,J.M., Pashkov,A., Licona-Cassani,C., Selem-Mojica,N. (2024). Meeting the challenge of genomic analysis: a collaboratively developed workshop for pangenomics and topological data analysis.
Bioinformatics Advances,
4 (1).
*
Artículo
19 - Deantas-Jahn,C., Mendoza,S.N., Licona-Cassani,C., Orellana,C., Saa,P.A. (2024). Metabolic modeling of Halomonas campaniensis improves polyhydroxybutyrate production under nitrogen limitation.
Applied Microbiology and Biotechnology,
108 (1),
310.
*
Artículo
20 - Lozano-Aguirre,L., Avitia,M., Lappe-Oliveras,P., Licona-Cassani,C., Cevallos,M.A., Le Borgne,S. (2024). Draft genomes of four Kluyveromyces marxianus isolates retrieved from the elaboration process of henequen (Agave fourcroydes) mezcal.
Microbiology Resource Announcements,
13 (3).
*
Artículo
21 - Mejia-Ponce,P.M., Chimal-Munoz,M., Zenteno-Cuevas,R., Licona-Cassani,C. (2024). Draft genome sequences of 12 Mycolicibacterium fortuitum isolates from human pulmonary infections in Veracruz, Mexico.
Microbiology Resource Announcements,
13 (4).
*
Artículo
22 - Rodriguez-Orduna,L., Lara-Diaz,V.J., Alcorta-Garcia,M.R., Lopez-Villasenor,C.N., Licona-Cassani,C. (2024). Genome sequences of 70 multidrug-resistant Gram-negative isolates in high-risk neonates in the Northeast of Mexico.
Microbiology Resource Announcements,
13 (9).
*
Artículo
23 - Zuffa,S., Schmid,R., Bauermeister,A., Gomes,P., Caraballo-Rodriguez,A.M., El Abiead,Y., Aron,A.T., Gentry,E.C., Zemlin,J., Meehan,M.J., Avalon,N.E., Cichewicz,R.H., Buzun,E., Terrazas,M.C., Hsu,C.Y., Oles,R., Ayala,A.V., Zhao,J., Chu,H., Kuijpers,M.C.M., Jackrel,S.L., Tugizimana,F., Nephali,L.P., Dubery,I.A., Madala,N.E., Moreira,E.A., Costa-Lotufo,L.V., Lopes,N.P., Rezende-Teixeira,P., Jimenez,P.C., Rimal,B., Patterson,A.D., Traxler,M.F., Pessotti,R.D.C., varado-Villalobos,D., Tamayo-Castillo,G., Chaverri,P., Escudero-Leyva,E., Quiros-Guerrero,L.M., Bory,A.J., Joubert,J., Rutz,A., Wolfender,J.L., Allard,P.M., Sichert,A., Pontrelli,S., Pullman,B.S., Bandeira,N., Gerwick,W.H., Gindro,K., Massana-Codina,J., Wagner,B.C., Forchhammer,K., Petras,D., Aiosa,N., Garg,N., Liebeke,M., Bourceau,P., Kang,K.B., Gadhavi,H., de Carvalho,L.P.S., Silva dos Santos,M., Perez-Lorente,A.I., Molina-Santiago,C., Romero,D., Franke,R., Bronstrup,M., Vera Ponce de Leon,A., Pope,P.B., La Rosa,S.L., La Barbera,G., Roager,H.M., Laursen,M.F., Hammerle,F., Siewert,B., Peintner,U., Licona-Cassani,C., Rodriguez-Orduna,L., Rampler,E., Hildebrand,F., Koellensperger,G., Schoeny,H., Hohenwallner,K., Panzenboeck,L., Gregor,R., O'Neill,E.C., Roxborough,E.T., Odoi,J., Bale,N.J., Ding,S., Sinninghe Damste,J.S., Guan,X.L., Cui,J.J., Ju,K.S., Silva,D.B., Silva,F.M.R., da Silva,G.F., Koolen,H.H.F., Grundmann,C., Clement,J.A., Mohimani,H., Broders,K., McPhail,K.L., Ober-Singleton,S.E., Rath,C.M., McDonald,D., Knight,R., Wang,M., Dorrestein,P.C. (2024). microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.
Nature Microbiology,
9 (2),
336-345.
*
Artículo
24 - Gonzalez-Salazar,L.A., Quezada,M., Rodriguez-Orduna,L., Ramos-Aboites,H., Capon,R.J., Souza-Saldivar,V., Barona-Gomez,F., Licona-Cassani,C. (2023). Biosynthetic novelty index reveals the metabolic potential of rare actinobacteria isolated from highly oligotrophic sediments.
Microbial Genomics,
9 (1).
*
Artículo
25 - Mejia-Ponce,P.M., Ramos-Gonzalez,E.J., Ramos-Garcia,A.A., Lara-Ramirez,E.E., Soriano-Herrera,A.R., Medellin-Luna,M.F., Valdez-Salazar,F., Castro-Garay,C.Y., Nunez-Contreras,J.J., De Donato-Capote,M., Sharma,A., Castaneda-Delgado,J.E., Zenteno-Cuevas,R., Enciso-Moreno,J.A., Licona-Cassani,C. (2023). Genomic epidemiology analysis of drug-resistant Mycobacterium tuberculosis distributed in Mexico.
PLoS ONE,
18 (10 October).
*
Artículo
26 - Morey-Leon,G., Mejia-Ponce,P.M., Granda Pardo,J.C., Munoz-Mawyin,K., Fernandez-Cadena,J.C., Garcia-Moreira,E., Andrade-Molina,D., Licona-Cassani,C., Berna,L. (2023). A precision overview of genomic resistance screening in Ecuadorian isolates of Mycobacterium tuberculosis using web-based bioinformatics tools.
PLoS ONE,
18 (12 December).
*
Artículo
27 - Ramos-de-la-Pena,A.M., Santana-Reynoso,A., Renard,C.M.G.C., Contreras-Esquivel,J.C., Rodriguez-Rodriguez,J., Aguilar,O., Gonzalez-Valdez,J., Licona-Cassani,C. (2023). Physical characterization of genipin complexes coupled with multivariate data analysis to assess formed pigments.
Colloids and Surfaces A: Physicochemical and Engineering Aspects,
673,
131774.
*
Artículo
28 - Rodriguez-Sanchez,A.C., Gonzalez-Salazar,L.A., Rodriguez-Orduna,L., Cumsille,A., Undabarrena,A., Camara,B., Selem-Mojica,N., Licona-Cassani,C. (2023). Phylogenetic classification of natural product biosynthetic gene clusters based on regulatory mechanisms.
Frontiers in Microbiology,
14.
*
Artículo
29 - Urrutia-Baca,V.H., Chuck-Hernandez,C., Gutierrez-Uribe,J., Ramos-Parra,P.A., Licona-Cassani,C. (2023). Development and validation of a versatile analytical method for absolute quantification of seven oligosaccharides in human, bovine, and goat milk.
Heliyon,
9 (11).
*
Artículo
30 - Perez-Martinez,D.E., Bermudez-Hernandez,G.A., Madrazo-Moya,C.F., Cancino-Munoz,I., Montero,H., Licona-Cassani,C., Muniz-Salazar,R., Comas,I., Zenteno-Cuevas,R. (2022). SNPs in Genes Related to DNA Damage Repair in Mycobacterium Tuberculosis: Their Association with Type 2 Diabetes Mellitus and Drug Resistance.
Genes,
13 (4).
*
Artículo
31 - Pineiro-Salvador,R., Vazquez-Garza,E., Cruz-Cardenas,J.A., Licona-Cassani,C., Garcia-Rivas,G., Moreno-Vasquez,J., Alcorta-Garcia,M.R., Lara-Diaz,V.J., Brunck,M.E.G. (2022). A cross-sectional study evidences regulations of leukocytes in the colostrum of mothers with obesity.
BMC Medicine,
20 (1).
*
Artículo
32 - Thenappan,D.P., Gonzalez-Salazar,L.A., Licona-Cassani,C., Kannepalli,A. (2022). Draft Genome Sequence of Streptomyces sp. Strain FB2, Isolated from Rice Rhizosphere.
Microbiology Resource Announcements,
11 (6).
*
Artículo
33 - Enriquez-Ochoa,D., Melendez-Martinez,D., Aguilar-Yanez,J.M., Licona-Cassani,C., Mayolo-Deloisa,K. (2021). Development of aqueous two-phase systems-based approaches for the selective recovery of metalloproteases and phospholipases A2 toxins from Crotalus molossus nigrescens venom.
Bioresources and Bioprocessing,
8 (1).
*
Artículo
34 - Flores-Gatica,M., Castaneda-Aponte,H., Gil-Garzon,M.R., Mora-Galvez,L.M., Banda-Magana,M.P., Jauregui-Jauregui,J.A., Torres-Acosta,M.A., Mayolo-Deloisa,K., Licona-Cassani,C. (2021). Primary recovery of hyaluronic acid produced in Streptococcus equi subsp. zooepidemicus using PEG?_"citrate aqueous two-phase systems.
AMB Express,
11 (1),
123.
*
Artículo
35 - Gamez-Valdez,J.S., Garcia-Mazcorro,J.F., Montoya-Rincon,A.H., Rodriguez-Reyes,D.L., Jimenez-Blanco,G., Alanis-Rodriguez,M.T., Perez-Cabeza de Vaca,R., Alcorta-Garcia,M.R., Brunck,M., Lara-Diaz,V.J., Licona-Cassani,C. (2021). Differential analysis of the bacterial community in colostrum samples from women with gestational diabetes mellitus and obesity.
Scientific Reports,
11 (1).
*
Artículo
36 - Jimenez-Ruano,A.C., Madrazo-Moya,C.F., Cancino-Munoz,I., Mejia-Ponce,P.M., Licona-Cassani,C., Comas,I., Muniz-Salazar,R., Zenteno-Cuevas,R. (2021). Whole genomic sequencing based genotyping reveals a specific X3 sublineage restricted to Mexico and related with multidrug resistance.
Scientific Reports,
11 (1),
1870.
*
Artículo
37 - Maldonado-Arriaga,B., Sandoval-Jimenez,S., Rodriguez-Silverio,J., Alcaraz-Estrada,S.L., Cortes-Espinosa,T., Perez-Cabeza de Vaca,R., Licona-Cassani,C., Gomez-Valdez,J.S., Shaw,J., Mondragon-Teran,P., Hernandez-Cortez,C., Suarez-Cuenca,J.A., Castro-Escarpulli,G. (2021). Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis.
Microbiologyopen,
10 (2).
*
Artículo
38 - Torres-Acosta,M.A., Castaneda-Aponte,H.M., Mora-Galvez,L.M., Gil-Garzon,M.R., Banda-Magana,M.P., Marcellin,E., Mayolo-Deloisa,K., Licona-Cassani,C. (2021). Comparative Economic Analysis Between Endogenous and Recombinant Production of Hyaluronic Acid.
Frontiers in Bioengineering and Biotechnology,
9.
*
Revisión
39 - Avila-Rodriguez,M.I., Melendez-Martinez,D., Licona-Cassani,C., Aguilar-Yanez,J.M., Benavides,J., Sanchez,M.L. (2020). Practical context of enzymatic treatment for wound healing: A secreted protease approach (review).
Biomedical Reports,
13 (1),
3-14.
*
Artículo
40 - Gallegos-Lopez,S., Mejia-Ponce,P.M., Gonzalez-Salazar,L.A., Rodriguez-Orduna,L., Souza-Saldivar,V., Licona-Cassani,C. (2020). Draft Genome Sequence of Streptomyces sp. Strain C8S0, isolated from a highly oligotrophic sediment.
Microbiology Resource Announcements,
9 (14).
*
Artículo
41 - Garcia-Mazcorro,J.F., Kawas,J.R., Licona-Cassani,C., Mertens-Talcott,S., Noratto,G. (2020). Different analysis strategies of 16S rRNA gene data from rodent studies generate contrasting views of gut bacterial communities associated with diet, health and obesity.
PeerJ,
8.
*
Artículo
42 - Garza-Aguilar,S.M., Garcia-Salinas,C., Mejia-Ponce,P.M, Licona-Cassani,C, Ramos-Parra,P.A, Diaz de la Garza,R.I. (2020). The complexity of folate polyglutamylation in plants: Postharvest ripening and ethylene modulate polyglutamylated profiles in climacteric fruits plus systematic analysis of the glutamyl tail-editing enzymes.
Scientia Horticulturae,
273 (109588).
*
Artículo
43 - Melendez-Martinez,D., Plenge-Tellechea,L.F., Gatica-Colima,A., Cruz-Perez,M.S., Aguilar-Yanez,J.M., Licona-Cassani,C. (2020). Functional mining of the crotalus spp. venom protease repertoire reveals potential for chronic wound therapeutics.
Molecules,
25 (15).
*
Artículo
44 - Orellana,C.A., Zaragoza,N.E., Licona-Cassani,C., Palfreyman,R.W., Cowie,N., Moonen,G., Moutafis,G., Power,J., Nielsen,L.K., Marcellin,E. (2020). Time-course transcriptomics reveals that amino acids catabolism plays a key role in toxinogenesis and morphology in Clostridium tetani.
Journal of Industrial Microbiology & Biotechnology,
47 (12),
1059-1073.
*
Artículo
45 - Khalil,Z.G., Cruz-Morales,P., Licona-Cassani,C., Marcellin,E., Capon,R.J. (2019). Inter-Kingdom beach warfare: Microbial chemical communication activates natural chemical defences.
ISME Journal,
13 (1),
147-158.
*
Artículo
46 - Cruz-Morales,P., Ramos-Aboites,H.E., Licona-Cassani,C., Selem-Mojica,N., Mejia-Ponce,P.M., Souza-Saldivar,V., Barona-Gomez,F. (2017). Actinobacteria phylogenomics, selective isolation from an iron oligotrophic environment and siderophore functional characterization, unveil new desferrioxamine traits.
FEMS Microbiology Ecology,
93 (9).
*
Artículo
47 - Quezada,M., Licona-Cassani,C., Cruz-Morales,P., Salim,A.A., Marcellin,E., Capon,R.J., Barona-Gomez,F. (2017). Diverse cone-snail species harbor closely related Streptomyces species with conserved chemical and genetic profiles, including polycyclic tetramic acid macrolactams.
Frontiers in Microbiology,
8 (NOV).
*
Artículo
48 - Steffani-Vallejo,J.L., Zuniga,C., Cruz-Morales,P., Lozano,L., Morales,M., Licona-Cassani,C., Revah,S., Utrilla,J. (2017). Draft genome sequence of sphingobacterium sp. CZ-UAM, isolated from a methanotrophic consortium.
Genome Announcements,
5 (33).
*
Artículo
49 - Licona-Cassani,C., Steen,J.A., Zaragoza,N.E., Moonen,G., Moutafis,G., Hodson,M.P., Power,J., Nielsen,L.K., Marcellin,E. (2016). Tetanus toxin production is triggered by the transition from amino acid consumption to peptides.
41,
113-124.
*
Artículo
50 - Marcellin,E., Behrendorff,J.B., Nagaraju,S., Detissera,S., Segovia,S., Palfreyman,R.W., Daniell,J., Licona-Cassani,C., Quek,L.E., Speight,R., Hodson,M.P., Simpson,S.D., Mitchell,W.P., Kopke,M., Nielsen,L.K. (2016). Low carbon fuels and commodity chemicals from waste gases-systematic approach to understand energy metabolism in a model acetogen.
Green Chemistry,
18 (10),
3020-3028.
*
Artículo
51 - Tierrafria,V.H., Licona-Cassani,C., Maldonado-Carmona,N., Romero-Rodriguez,A., Centeno-Leija,S., Marcellin,E., Rodriguez-Sanoja,R., Ruiz-Villafan,B., Nielsen,L.K., Sanchez,S. (2016). Deletion of the hypothetical protein SCO2127 of Streptomyces coelicolor allowed identification of a new regulator of actinorhodin production.
Applied Microbiology and Biotechnology,
100 (21),
9229-9237 [Correction 104 (8) 3687].
*
Revisión
52 - Licona-Cassani,C., Cruz-Morales,P., Manteca,A., Barona-Gomez,F., Nielsen,L.K., Marcellin,E. (2015). Systems Biology Approaches to Understand Natural Products Biosynthesis.
Frontiers in Bioengineering and Biotechnology,
3.
*
Artículo
53 - Navone,L., Macagno,J.P., Licona-Cassani,C., Marcellin,E., Nielsen,L.K., Gramajo,H., Rodriguez,E. (2015). AllR controls the expression of Streptomyces coelicolor allantoin pathway genes.
Applied and Environmental Microbiology,
81 (19),
6649-6659.
*
Artículo
54 - Liao,C., Rigali,S., Licona-Cassani,C., Marcellin,E., Nielsen,L.K., Ye,B.C. (2014). Control of chitin and N-acetylglucosamine utilization in Saccharopolyspora erythraea.
Microbiology (United Kingdom),
160 (9),
1914-1928.
*
Artículo
55 - Licona-Cassani,C., Lara,A.R., Cabrera-Valladares,N., Escalante,A., Hernandez-Chavez,G., Martinez,A., Bolivar,F., Gosset,G. (2014). Inactivation of Pyruvate Kinase or the Phosphoenolpyruvate: Sugar Phosphotransferase System Increases Shikimic and Dehydroshikimic Acid Yields from Glucose in Bacillus subtilis.
Journal of Molecular Microbiology and Biotechnology,
24 (1),
37-45.
Artículo
56 - Licona-Cassani,C., Lim,S., Marcellin,E., Nielsen,L.K. (2014). Temporal dynamics of the saccharopolyspora erythraea phosphoproteome.
Molecular and Cellular Proteomics,
13 (5),
1219-1230.
*
Artículo
57 - Navone,L., Casati,P., Licona-Cassani,C., Marcellin,E., Nielsen,L.K., Rodriguez,E., Gramajo,H. (2014). Allantoin catabolism influences the production of antibiotics in Streptomyces coelicolor.
Applied Microbiology and Biotechnology,
98 (1),
351-360.
*
Artículo
58 - Marcellin,E., Licona-Cassani,C., Mercer,T.R., Palfreyman,R.W., Nielsen,L.K. (2013). Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach.
BMC Genomics,
14 (1).
*
Artículo
59 - Marcellin,E., Mercer,T.R., Licona-Cassani,C., Palfreyman,R.W., Dinger,M.E., Steen,J.A., Mattick,J.S., Nielsen,L.K. (2013). Saccharopolyspora erythraea's genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch.
BMC Genomics,
14 (1).
*
Artículo
60 - Licona-Cassani,C., Marcellin,E., Quek,L.E., Jacob,S., Nielsen,L.K. (2012). Reconstruction of the Saccharopolyspora erythraea genome-scale model and its use for enhancing erythromycin production.
Antonie Van Leeuwenhoek,
102 (3),
493-502.
*
Artículo
61 - Utrilla,J., Licona-Cassani,C., Marcellin,E., Gosset,G., Nielsen,L.K., Martinez,A. (2012). Engineering and adaptive evolution of Escherichia coli for d-lactate fermentation reveals GatC as a xylose transporter.
Metabolic Engineering,
14 (5),
469-476.
Internacional
62 - Perez-Martinez,D., Mejia-Ponce,P., Licona-Cassani,C., de Igartua,E., Bermudez,G., Viveros,D., Zenteno-Cuevas,R. (2023). Drug Resistance in Tuberculosis: Mechanisms, Diagnosis, New Responses, and the Need for an Integrated Approach. Integrated Science.
331-359,
11.
*
Preprint
63 - Xolalpa-Aroche,A., Contreras-Peruyero,H., Delgado-Suarez,E.J., Hernandez-Mena,D.I., Moguel-Chin,Wilson I., Rivero-Cruz,J.F., Velarde,R.A., Ortiz-Vazquez,E., Rivero-Cruz,B.E., Lovaco-Flores,J.A., Rodriguez-Orduna,L., Licona-Cassani,C., Barona-Gomez,F., Selem-Mojica,N. (2026). Genome-resolved metagenomics reveals a phylogenetically cohesive Acetilactobacillus-like species complex dominating stingless bee pot honey.
bioRxiv,
Preprint posted February 27.
*
Preprint
64 - Aguilar,C., Verdel-Aranda,K., Ramos-Aboites, H.E., Morales, M.A., Licona-Cassani,C., Barona-Gómez, F. (2020). Convergent evolution of Streptomyces protease inhibitors involving a tRNA-mediated condensation-minus NRPS.
bioRxiv,
Posted October 28.
Artículo
65 - Corona-Cervantes,K., Urrutia-Baca,V.H., Gamez-Valdez,J.S., Jimenez-Lopez,B., Rodriguez-Gutierrez,N.A., Chavez-Caraza,K., Espiricueta-Candelaria,F., Salas-Villalobos,U.A., Ramos-Parra,P.A., Gutierrez-Uribe,J.A., Brunck,M., Chuck-Hernandez,C., Licona-Cassani,C.. Maternal obesity alters human milk oligosaccharides content and correlates with early acquisition of late colonizers in the neonatal gut microbiome.
Gut Microbes,
18 (1),
2607043.
Revisión in press
66 - Perez-Morales,G., Merino,E., Cevallos,M.A., Gosset,G., Licona-Cassani,C., Caspeta,L., Martinez,A.. Toward a systems metabolic engineering approach to improve thermotolerance of Escherichia coli.
Microbial Cell Factories,
Mar 16 [Online ahead of print].
Preprint
67 - Xolalpa-Aroche,A., Contreras-Peruyero,H., Delgado-Suarez,E.J., Hernandez-Mena,D.I., Moguel-Chin,Wilson I., Rivero-Cruz,J.F., Velarde,R.A., Ortiz-Vazquez,E., Rivero-Cruz,B.E., Lovaco-Flores,J.A., Rodriguez-Orduna,L., Licona-Cassani,C., Barona-Gomez,F., Selem-Mojica,N.. Genome-resolved metagenomics reveals a phylogenetically cohesive Acetilactobacillus-like species complex dominating stingless bee pot honey.
bioRxiv,
Preprint posted February 27.
*
Artículo
68 - Alvarado-Pena,N., Munoz-Torrico,M., Narvaez-Diaz,L., Mejia-Ponce,P.M, Becerril-Vargas,E., Zuniga,J., Muniz-Salazar,R., Laniado-Laborin,R., Licona-Cassani,C., Soberon,X., Silva-Herzog,E.. Mycobacterium tuberculosis genomic surveillance in Mexico. Characterization of variants in drug resistance and efflux pump genes.
Frontiers in Microbiology,
16,
1666838.
Artículo
69 - Elakkya,M., Gonzalez-Salazar,L.A., Lopez-Reyes,K., Rebelo-Romao,I., Sousa,A., Godde,V., Niehaus,K., Thenappan,D.P., Vilchez,J.I., Paul,S., Licona-Cassani,C.. Comparative genomics and metabolomics reveal phytohormone production, nutrient acquisition, and osmotic stress tolerance in Azotobacter chroococcum W5.
Frontiers in Microbiology,
16,
1626016.
Artículo
70 - Gallardo-Camarena,M.V., Reverchon,F., Mendez-Bravo,A., Torres-Acosta,M.A., Licona-Cassani,C.. Control of avocado anthracnose by carposphere-associated Kosakonia cowanii VG1 for agricultural applications.
AMB Express,
15 (1).
*
Artículo
71 - Gallardo-Camarena,M.V., Torres-Acosta,M.A., Licona-Cassani,C.. Economic evaluation of large-scale production for Colletotrichum antagonists as biocontrol agents against anthracnose.
Journal of Chemical Technology and Biotechnology,
100 (5),
1117-1128.
*
Artículo
72 - Morey-Leon,G., Mejia-Ponce,P.M., Fernandez-Cadena,J.C, Garcia-Moreira,E., Andrade-Molina,D., Licona-Cassani,C., Fresia,P, Berna,L. Global epidemiology of Mycobacterium tuberculosis lineage 4 insights from Ecuadorian genomic data.
Scientific Reports,
15 (1).
*
Artículo
73 - Ramos-de-la-Pena,A.M., Santana-Reynoso,A., Gonzalez-Valdez,J., Aguilar,O., Renard,C.M.G.C., Licona-Cassani,C.. Influence of molar ratio and pH on physicochemical characteristics of genipin-derived pigments formed at cold and mild temperatures.
Food Chemistry Advances,
7,
100983.
*
Artículo
74 - Ramos-Garcia,A.A., Mejia-Ponce,P.M., Salem-Mojica,N., Santos-Diaz,A., Martinez-Ledesma,E., Licona-Cassani,C.. FuNTB: a functional network clustering tool for the analysis of genome-wide genetic variants in Mycobacterium tuberculosis.
Bioinformatics,
41 (7),
btaf341.
Artículo
75 - Rodriguez-Orduna,L., Aguilar,C., Hernandez-Melgar,A.G., Arocha-Garza,H.F., Verdel-Aranda,K., Vazquez-Rodriguez,A., Lopez-Ribot,J.L., Moreno-Ulloa,A., Licona-Cassani,C.. Biodiscovery of Actinomycetota through metabolo-genomics reveals functional diversity across contrasting Mexican ecosystems.
Microbial Genomics,
11 (10),
001557 [corrigendum vol 12 (2)].
Artículo
76 - Salazar-Garcia,L.M., Damas-Ramos,L.C., Trejo-Alarcon,L.M., Rago,D., Ahonen,L., Cruz-Morales,P., Ponce-Noyola,P., Licona-Cassani,C.. CRISPR-driven enhanced hydrocarbon emulsification in an environmental Pseudomonas aeruginosa strain.
Microbial Cell Factories,
24 (1),
151.
Artículo
77 - Trejo-Alarcon,L.M., Cano-Prieto,C., Calheiros de Carvalho,A., Rago,D., Ahonen,L., Cruz-Morales,P., Licona-Cassani,C.. Integrative metabolo-genomics suggests a biosynthetic pathway for tetrangulol in Streptomyces sp. KL110A.
World Journal of Microbiology & Biotechnology,
41 (3).
*
Artículo
78 - Trejo-Alarcon,L.M., Cruz-Morales,P., Licona-Cassani,C.. Draft genome sequence of Streptomyces sp. CC302I with non-canonical biosynthetic gene clusters for codon-readthrough activity.
Microbiology Resource Announcements,
14 (2).
*
Artículo
79 - Zdouc,M.M., Blin,K., Louwen,N.L.L., Navarro,J., Loureiro,C., Bader,C.D., Bailey,C.B., Barra,L., Booth,T.J., Bozhuyuk,K.A.J., Cediel-Becerra,J.D.D., Charlop-Powers,Z., Chevrette,M.G., Chooi,Y.H., D'Agostino,P.M., de Rond T., Del Pup E., Duncan,K.R., Gu,W., Hanif,N., Helfrich,E.J.N., Jenner,M., Katsuyama,Y., Korenskaia,A., Krug,D., Libis,V., Lund,G.A., Mantri,S., Morgan,K.D., Owen,C., Phan,C.S., Philmus,B., Reitz,Z.L., Robinson,S.L., Singh,K.S., Teufel,R., Tong,Y., Tugizimana,F., Ulanova,D., Winter,J.M., Aguilar,C., Akiyama,D.Y., Al-Salihi,S.A.A., Alanjary,M., Alberti,F., Aleti,G., Alharthi,S.A., Rojo,M.Y.A., Arishi,A.A., Augustijn,H.E., Avalon,N.E., Avelar-Rivas,J.A., Axt,K.K., Barbieri,H.B., Barbosa,J.C.J., Barboza Segato,L.G., Barrett,S.E., Baunach,M., Beemelmanns,C., Beqaj,D., Berger,T., Bernaldo-Aguero,J., Bettenbuhl,S.M., Bielinski,V.A., Biermann,F., Borges,R.M., Borriss,R., Breitenbach,M., Bretscher,K.M., Brigham,M.W., Buedenbender,L., Bulcock,B.W., Cano-Prieto,C., Capela,J., Carrion,V.J., Carter,R.S., Castelo-Branco,R., Castro-Falcon,G., Chagas,F.O., Charria-Giron,E., Chaudhri,A.A., Chaudhry,V., Choi,H., Choi,Y., Choupannejad,R., Chromy,J., Donahey,M.S.C., Collemare,J., Connolly,J.A., Creamer,K.E., Crusemann,M., Cruz,A.A., Cumsille,A., Dallery,J.F., Damas-Ramos,L.C., Damiani,T., de Kruijff M., Martin,B.D., Sala,G.D., Dillen,J., Doering,D.T., Dommaraju,S.R., Durusu,S., Egbert,S., Ellerhorst,M., Faussurier,B., Fetter,A., Feuermann,M., Fewer,D.P., Foldi,J., Frediansyah,A., Garza,E.A., Gavriilidou,A., Gentile,A., Gerke,J., Gerstmans,H., Gomez-Escribano,J.P., Gonzalez-Salazar,L.A., Grayson,N.E., Greco,C., Gomez,J.E.G., Guerra,S., Flores,S.G., Gurevich,A., Gutierrez-Garcia,K., Hart,L., Haslinger,K., He,B., Hebra,T., Hemmann,J.L., Hindra,H., Hoing,L., Holland,D.C., Holme,J.E., Horch,T., Hrab,P., Hu,J., Huynh,T.H., Hwang,J.Y., Iacovelli,R., Iftime,D., Iorio,M., Jayachandran,S., Jeong,E., Jing,J., Jung,J.J., Kakumu,Y., Kalkreuter,E., Kang,K.B., Kang,S., Kim,W., Kim,G.J., Kim,H., Kim,H.U., Klapper,M., Koetsier,R.A., Kollten,C., Kovacs,A.T., Kriukova,Y., Kubach,N., Kunjapur,A.M., Kushnareva,A.K., Kust,A., Lamber,J., Larralde,M., Larsen,N.J., Launay,A.P., Le,N.T., Lebeer,S., Lee,B.T., Lee,K., Lev,K.L., Li,S.M., Li,Y.X., Licona-Cassani,C., Lien,A., Liu,J., Lopez,J.A.V., Machushynets,N.V., Macias,M.I., Mahmud,T., Maleckis,M., Martinez-Martinez,A.M., Mast,Y., Maximo,M.F., McBride,C.M., McLellan,R.M., Bhatt,K.M., Melkonian,C., Merrild,A., Metsa-Ketela,M., Mitchell,D.A., Muller,A.V., Nguyen,G.S., Nguyen,H.T., Niedermeyer,T.H.J., O'Hare,J.H., Ossowicki,A., Ostash,B.O., Otani,H., Padva,L., Paliyal,S., Pan,X., Panghal,M., Parade,D.S., Park,J., Parra,J., Rubio,M.P., Pham,H.T., Pidot,S.J., Piel,J., Pourmohsenin,B., Rakhmanov,M., Ramesh,S., Rasmussen,M.H., Rego,A., Reher,R., Rice,A.J., Rigolet,A., Romero-Otero,A., Rosas-Becerra,L.R., Rosiles,P.Y., Rutz,A., Ryu,B., Sahadeo,L.A., Saldanha,M., Salvi,L., Sanchez-Carvajal,E., Santos-Medellin,C., Sbaraini,N., Schoellhorn,S.M., Schumm,C., Sehnal,L., Selem,N., Shah,A.D., Shishido,T.K., Sieber,S., Silviani,V., Singh,G., Singh,H., Sokolova,N., Sonnenschein,E.C., Sosio,M., Sowa,S.T., Steffen,K., Stegmann,E., Streiff,A.B., Struder,A., Surup,F., Svenningsen,T., Sweeney,D., Szenei,J., Tagirdzhanov,A., Tan,B., Tarnowski,M.J.. MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration.
Nucleic Acids Research,
53 (D1),
gkae1115,
D678-D690.
Artículo
80 - Aguilar,C., Alwali,A., Mair,M., Rodriguez-Orduna,L., Contreras-Peruyero,H., Modi,R., Roberts,C., Selem-Mojica,N., Licona-Cassani,C., Parkinson,E.I.. Actinomycetota bioprospecting from ore-forming environments.
Microbial Genomics,
10 (5),
001253.
*
Artículo
81 - Alwali,A.Y., Santos,D., Aguilar,C., Birch,A., Rodriguez-Ordunea,L., Roberts,C.B., Modi,R., Licona-Cassani,C., Parkinson,E.I.. Discovery of Streptomyces species CS-62, a novel producer of the Acinetobacter baumannii selective antibiotic factumycin.
Journal of Industrial Microbiology & Biotechnology,
51,
kuae014.
*
Artículo
82 - Bermudez-Hernandez,G.A., Perez-Martinez,D., Ortiz-Leon,M.C., Muniz-Salazar,R., Licona-Cassani,C., Zenteno-Cuevas,R.. Mutational Dynamics Related to Antibiotic Resistance in M. tuberculosis Isolates from Serial Samples of Patients with Tuberculosis and Type 2 Diabetes Mellitus.
Microorganisms,
12 (2).
*
Artículo
83 - Contreras-Peruyero,H., Guerrero-Flores,S., Zirion-Martinez,C., Mejia-Ponce,P.M., Navarro-Miranda,M., Lovaco-Flores,J.A., Ibarra-Rodriguez,J.M., Pashkov,A., Licona-Cassani,C., Selem-Mojica,N.. Meeting the challenge of genomic analysis: a collaboratively developed workshop for pangenomics and topological data analysis.
Bioinformatics Advances,
4 (1).
*
Artículo
84 - Deantas-Jahn,C., Mendoza,S.N., Licona-Cassani,C., Orellana,C., Saa,P.A.. Metabolic modeling of Halomonas campaniensis improves polyhydroxybutyrate production under nitrogen limitation.
Applied Microbiology and Biotechnology,
108 (1),
310.
*
Artículo
85 - Lozano-Aguirre,L., Avitia,M., Lappe-Oliveras,P., Licona-Cassani,C., Cevallos,M.A., Le Borgne,S.. Draft genomes of four Kluyveromyces marxianus isolates retrieved from the elaboration process of henequen (Agave fourcroydes) mezcal.
Microbiology Resource Announcements,
13 (3).
*
Artículo
86 - Mejia-Ponce,P.M., Chimal-Munoz,M., Zenteno-Cuevas,R., Licona-Cassani,C.. Draft genome sequences of 12 Mycolicibacterium fortuitum isolates from human pulmonary infections in Veracruz, Mexico.
Microbiology Resource Announcements,
13 (4).
*
Artículo
87 - Rodriguez-Orduna,L., Lara-Diaz,V.J., Alcorta-Garcia,M.R., Lopez-Villasenor,C.N., Licona-Cassani,C.. Genome sequences of 70 multidrug-resistant Gram-negative isolates in high-risk neonates in the Northeast of Mexico.
Microbiology Resource Announcements,
13 (9).
*
Artículo
88 - Zuffa,S., Schmid,R., Bauermeister,A., Gomes,P., Caraballo-Rodriguez,A.M., El Abiead,Y., Aron,A.T., Gentry,E.C., Zemlin,J., Meehan,M.J., Avalon,N.E., Cichewicz,R.H., Buzun,E., Terrazas,M.C., Hsu,C.Y., Oles,R., Ayala,A.V., Zhao,J., Chu,H., Kuijpers,M.C.M., Jackrel,S.L., Tugizimana,F., Nephali,L.P., Dubery,I.A., Madala,N.E., Moreira,E.A., Costa-Lotufo,L.V., Lopes,N.P., Rezende-Teixeira,P., Jimenez,P.C., Rimal,B., Patterson,A.D., Traxler,M.F., Pessotti,R.D.C., varado-Villalobos,D., Tamayo-Castillo,G., Chaverri,P., Escudero-Leyva,E., Quiros-Guerrero,L.M., Bory,A.J., Joubert,J., Rutz,A., Wolfender,J.L., Allard,P.M., Sichert,A., Pontrelli,S., Pullman,B.S., Bandeira,N., Gerwick,W.H., Gindro,K., Massana-Codina,J., Wagner,B.C., Forchhammer,K., Petras,D., Aiosa,N., Garg,N., Liebeke,M., Bourceau,P., Kang,K.B., Gadhavi,H., de Carvalho,L.P.S., Silva dos Santos,M., Perez-Lorente,A.I., Molina-Santiago,C., Romero,D., Franke,R., Bronstrup,M., Vera Ponce de Leon,A., Pope,P.B., La Rosa,S.L., La Barbera,G., Roager,H.M., Laursen,M.F., Hammerle,F., Siewert,B., Peintner,U., Licona-Cassani,C., Rodriguez-Orduna,L., Rampler,E., Hildebrand,F., Koellensperger,G., Schoeny,H., Hohenwallner,K., Panzenboeck,L., Gregor,R., O'Neill,E.C., Roxborough,E.T., Odoi,J., Bale,N.J., Ding,S., Sinninghe Damste,J.S., Guan,X.L., Cui,J.J., Ju,K.S., Silva,D.B., Silva,F.M.R., da Silva,G.F., Koolen,H.H.F., Grundmann,C., Clement,J.A., Mohimani,H., Broders,K., McPhail,K.L., Ober-Singleton,S.E., Rath,C.M., McDonald,D., Knight,R., Wang,M., Dorrestein,P.C.. microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.
Nature Microbiology,
9 (2),
336-345.
*
Artículo
89 - Gonzalez-Salazar,L.A., Quezada,M., Rodriguez-Orduna,L., Ramos-Aboites,H., Capon,R.J., Souza-Saldivar,V., Barona-Gomez,F., Licona-Cassani,C.. Biosynthetic novelty index reveals the metabolic potential of rare actinobacteria isolated from highly oligotrophic sediments.
Microbial Genomics,
9 (1).
*
Artículo
90 - Mejia-Ponce,P.M., Ramos-Gonzalez,E.J., Ramos-Garcia,A.A., Lara-Ramirez,E.E., Soriano-Herrera,A.R., Medellin-Luna,M.F., Valdez-Salazar,F., Castro-Garay,C.Y., Nunez-Contreras,J.J., De Donato-Capote,M., Sharma,A., Castaneda-Delgado,J.E., Zenteno-Cuevas,R., Enciso-Moreno,J.A., Licona-Cassani,C.. Genomic epidemiology analysis of drug-resistant Mycobacterium tuberculosis distributed in Mexico.
PLoS ONE,
18 (10 October).
*
Artículo
91 - Morey-Leon,G., Mejia-Ponce,P.M., Granda Pardo,J.C., Munoz-Mawyin,K., Fernandez-Cadena,J.C., Garcia-Moreira,E., Andrade-Molina,D., Licona-Cassani,C., Berna,L.. A precision overview of genomic resistance screening in Ecuadorian isolates of Mycobacterium tuberculosis using web-based bioinformatics tools.
PLoS ONE,
18 (12 December).
*
Artículo
92 - Ramos-de-la-Pena,A.M., Santana-Reynoso,A., Renard,C.M.G.C., Contreras-Esquivel,J.C., Rodriguez-Rodriguez,J., Aguilar,O., Gonzalez-Valdez,J., Licona-Cassani,C.. Physical characterization of genipin complexes coupled with multivariate data analysis to assess formed pigments.
Colloids and Surfaces A: Physicochemical and Engineering Aspects,
673,
131774.
*
Artículo
93 - Rodriguez-Sanchez,A.C., Gonzalez-Salazar,L.A., Rodriguez-Orduna,L., Cumsille,A., Undabarrena,A., Camara,B., Selem-Mojica,N., Licona-Cassani,C.. Phylogenetic classification of natural product biosynthetic gene clusters based on regulatory mechanisms.
Frontiers in Microbiology,
14.
*
Artículo
94 - Urrutia-Baca,V.H., Chuck-Hernandez,C., Gutierrez-Uribe,J., Ramos-Parra,P.A., Licona-Cassani,C.. Development and validation of a versatile analytical method for absolute quantification of seven oligosaccharides in human, bovine, and goat milk.
Heliyon,
9 (11).
*
Internacional
95 - Perez-Martinez,D., Mejia-Ponce,P., Licona-Cassani,C., de Igartua,E., Bermudez,G., Viveros,D., Zenteno-Cuevas,R.. Drug Resistance in Tuberculosis: Mechanisms, Diagnosis, New Responses, and the Need for an Integrated Approach. Integrated Science.
331-359,
11.
*
Artículo
96 - Perez-Martinez,D.E., Bermudez-Hernandez,G.A., Madrazo-Moya,C.F., Cancino-Munoz,I., Montero,H., Licona-Cassani,C., Muniz-Salazar,R., Comas,I., Zenteno-Cuevas,R.. SNPs in Genes Related to DNA Damage Repair in Mycobacterium Tuberculosis: Their Association with Type 2 Diabetes Mellitus and Drug Resistance.
Genes,
13 (4).
*
Artículo
97 - Pineiro-Salvador,R., Vazquez-Garza,E., Cruz-Cardenas,J.A., Licona-Cassani,C., Garcia-Rivas,G., Moreno-Vasquez,J., Alcorta-Garcia,M.R., Lara-Diaz,V.J., Brunck,M.E.G.. A cross-sectional study evidences regulations of leukocytes in the colostrum of mothers with obesity.
BMC Medicine,
20 (1).
*
Artículo
98 - Thenappan,D.P., Gonzalez-Salazar,L.A., Licona-Cassani,C., Kannepalli,A.. Draft Genome Sequence of Streptomyces sp. Strain FB2, Isolated from Rice Rhizosphere.
Microbiology Resource Announcements,
11 (6).
*
Artículo
99 - Enriquez-Ochoa,D., Melendez-Martinez,D., Aguilar-Yanez,J.M., Licona-Cassani,C., Mayolo-Deloisa,K.. Development of aqueous two-phase systems-based approaches for the selective recovery of metalloproteases and phospholipases A2 toxins from Crotalus molossus nigrescens venom.
Bioresources and Bioprocessing,
8 (1).
*
Artículo
100 - Flores-Gatica,M., Castaneda-Aponte,H., Gil-Garzon,M.R., Mora-Galvez,L.M., Banda-Magana,M.P., Jauregui-Jauregui,J.A., Torres-Acosta,M.A., Mayolo-Deloisa,K., Licona-Cassani,C.. Primary recovery of hyaluronic acid produced in Streptococcus equi subsp. zooepidemicus using PEG?_"citrate aqueous two-phase systems.
AMB Express,
11 (1),
123.
*
Artículo
101 - Gamez-Valdez,J.S., Garcia-Mazcorro,J.F., Montoya-Rincon,A.H., Rodriguez-Reyes,D.L., Jimenez-Blanco,G., Alanis-Rodriguez,M.T., Perez-Cabeza de Vaca,R., Alcorta-Garcia,M.R., Brunck,M., Lara-Diaz,V.J., Licona-Cassani,C.. Differential analysis of the bacterial community in colostrum samples from women with gestational diabetes mellitus and obesity.
Scientific Reports,
11 (1).
*
Artículo
102 - Jimenez-Ruano,A.C., Madrazo-Moya,C.F., Cancino-Munoz,I., Mejia-Ponce,P.M., Licona-Cassani,C., Comas,I., Muniz-Salazar,R., Zenteno-Cuevas,R.. Whole genomic sequencing based genotyping reveals a specific X3 sublineage restricted to Mexico and related with multidrug resistance.
Scientific Reports,
11 (1),
1870.
*
Artículo
103 - Maldonado-Arriaga,B., Sandoval-Jimenez,S., Rodriguez-Silverio,J., Alcaraz-Estrada,S.L., Cortes-Espinosa,T., Perez-Cabeza de Vaca,R., Licona-Cassani,C., Gomez-Valdez,J.S., Shaw,J., Mondragon-Teran,P., Hernandez-Cortez,C., Suarez-Cuenca,J.A., Castro-Escarpulli,G.. Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis.
Microbiologyopen,
10 (2).
*
Artículo
104 - Torres-Acosta,M.A., Castaneda-Aponte,H.M., Mora-Galvez,L.M., Gil-Garzon,M.R., Banda-Magana,M.P., Marcellin,E., Mayolo-Deloisa,K., Licona-Cassani,C.. Comparative Economic Analysis Between Endogenous and Recombinant Production of Hyaluronic Acid.
Frontiers in Bioengineering and Biotechnology,
9.
*
Revisión
105 - Avila-Rodriguez,M.I., Melendez-Martinez,D., Licona-Cassani,C., Aguilar-Yanez,J.M., Benavides,J., Sanchez,M.L.. Practical context of enzymatic treatment for wound healing: A secreted protease approach (review).
Biomedical Reports,
13 (1),
3-14.
*
Artículo
106 - Gallegos-Lopez,S., Mejia-Ponce,P.M., Gonzalez-Salazar,L.A., Rodriguez-Orduna,L., Souza-Saldivar,V., Licona-Cassani,C.. Draft Genome Sequence of Streptomyces sp. Strain C8S0, isolated from a highly oligotrophic sediment.
Microbiology Resource Announcements,
9 (14).
*
Artículo
107 - Garcia-Mazcorro,J.F., Kawas,J.R., Licona-Cassani,C., Mertens-Talcott,S., Noratto,G.. Different analysis strategies of 16S rRNA gene data from rodent studies generate contrasting views of gut bacterial communities associated with diet, health and obesity.
PeerJ,
8.
*
Artículo
108 - Garza-Aguilar,S.M., Garcia-Salinas,C., Mejia-Ponce,P.M, Licona-Cassani,C, Ramos-Parra,P.A, Diaz de la Garza,R.I.. The complexity of folate polyglutamylation in plants: Postharvest ripening and ethylene modulate polyglutamylated profiles in climacteric fruits plus systematic analysis of the glutamyl tail-editing enzymes.
Scientia Horticulturae,
273 (109588).
*
Artículo
109 - Melendez-Martinez,D., Plenge-Tellechea,L.F., Gatica-Colima,A., Cruz-Perez,M.S., Aguilar-Yanez,J.M., Licona-Cassani,C.. Functional mining of the crotalus spp. venom protease repertoire reveals potential for chronic wound therapeutics.
Molecules,
25 (15).
*
Artículo
110 - Orellana,C.A., Zaragoza,N.E., Licona-Cassani,C., Palfreyman,R.W., Cowie,N., Moonen,G., Moutafis,G., Power,J., Nielsen,L.K., Marcellin,E.. Time-course transcriptomics reveals that amino acids catabolism plays a key role in toxinogenesis and morphology in Clostridium tetani.
Journal of Industrial Microbiology & Biotechnology,
47 (12),
1059-1073.
*
Preprint
111 - Aguilar,C., Verdel-Aranda,K., Ramos-Aboites, H.E., Morales, M.A., Licona-Cassani,C., Barona-Gómez, F.. Convergent evolution of Streptomyces protease inhibitors involving a tRNA-mediated condensation-minus NRPS.
bioRxiv,
Posted October 28.
Artículo
112 - Khalil,Z.G., Cruz-Morales,P., Licona-Cassani,C., Marcellin,E., Capon,R.J.. Inter-Kingdom beach warfare: Microbial chemical communication activates natural chemical defences.
ISME Journal,
13 (1),
147-158.
*
Artículo
113 - Cruz-Morales,P., Ramos-Aboites,H.E., Licona-Cassani,C., Selem-Mojica,N., Mejia-Ponce,P.M., Souza-Saldivar,V., Barona-Gomez,F.. Actinobacteria phylogenomics, selective isolation from an iron oligotrophic environment and siderophore functional characterization, unveil new desferrioxamine traits.
FEMS Microbiology Ecology,
93 (9).
*
Artículo
114 - Quezada,M., Licona-Cassani,C., Cruz-Morales,P., Salim,A.A., Marcellin,E., Capon,R.J., Barona-Gomez,F.. Diverse cone-snail species harbor closely related Streptomyces species with conserved chemical and genetic profiles, including polycyclic tetramic acid macrolactams.
Frontiers in Microbiology,
8 (NOV).
*
Artículo
115 - Steffani-Vallejo,J.L., Zuniga,C., Cruz-Morales,P., Lozano,L., Morales,M., Licona-Cassani,C., Revah,S., Utrilla,J.. Draft genome sequence of sphingobacterium sp. CZ-UAM, isolated from a methanotrophic consortium.
Genome Announcements,
5 (33).
*
Artículo
116 - Licona-Cassani,C., Steen,J.A., Zaragoza,N.E., Moonen,G., Moutafis,G., Hodson,M.P., Power,J., Nielsen,L.K., Marcellin,E.. Tetanus toxin production is triggered by the transition from amino acid consumption to peptides.
41,
113-124.
*
Artículo
117 - Marcellin,E., Behrendorff,J.B., Nagaraju,S., Detissera,S., Segovia,S., Palfreyman,R.W., Daniell,J., Licona-Cassani,C., Quek,L.E., Speight,R., Hodson,M.P., Simpson,S.D., Mitchell,W.P., Kopke,M., Nielsen,L.K.. Low carbon fuels and commodity chemicals from waste gases-systematic approach to understand energy metabolism in a model acetogen.
Green Chemistry,
18 (10),
3020-3028.
*
Artículo
118 - Tierrafria,V.H., Licona-Cassani,C., Maldonado-Carmona,N., Romero-Rodriguez,A., Centeno-Leija,S., Marcellin,E., Rodriguez-Sanoja,R., Ruiz-Villafan,B., Nielsen,L.K., Sanchez,S.. Deletion of the hypothetical protein SCO2127 of Streptomyces coelicolor allowed identification of a new regulator of actinorhodin production.
Applied Microbiology and Biotechnology,
100 (21),
9229-9237 [Correction 104 (8) 3687].
*
Revisión
119 - Licona-Cassani,C., Cruz-Morales,P., Manteca,A., Barona-Gomez,F., Nielsen,L.K., Marcellin,E.. Systems Biology Approaches to Understand Natural Products Biosynthesis.
Frontiers in Bioengineering and Biotechnology,
3.
*
Artículo
120 - Navone,L., Macagno,J.P., Licona-Cassani,C., Marcellin,E., Nielsen,L.K., Gramajo,H., Rodriguez,E.. AllR controls the expression of Streptomyces coelicolor allantoin pathway genes.
Applied and Environmental Microbiology,
81 (19),
6649-6659.
*
Artículo
121 - Liao,C., Rigali,S., Licona-Cassani,C., Marcellin,E., Nielsen,L.K., Ye,B.C.. Control of chitin and N-acetylglucosamine utilization in Saccharopolyspora erythraea.
Microbiology (United Kingdom),
160 (9),
1914-1928.
*
Artículo
122 - Licona-Cassani,C., Lara,A.R., Cabrera-Valladares,N., Escalante,A., Hernandez-Chavez,G., Martinez,A., Bolivar,F., Gosset,G.. Inactivation of Pyruvate Kinase or the Phosphoenolpyruvate: Sugar Phosphotransferase System Increases Shikimic and Dehydroshikimic Acid Yields from Glucose in Bacillus subtilis.
Journal of Molecular Microbiology and Biotechnology,
24 (1),
37-45.
Artículo
123 - Licona-Cassani,C., Lim,S., Marcellin,E., Nielsen,L.K.. Temporal dynamics of the saccharopolyspora erythraea phosphoproteome.
Molecular and Cellular Proteomics,
13 (5),
1219-1230.
*
Artículo
124 - Navone,L., Casati,P., Licona-Cassani,C., Marcellin,E., Nielsen,L.K., Rodriguez,E., Gramajo,H.. Allantoin catabolism influences the production of antibiotics in Streptomyces coelicolor.
Applied Microbiology and Biotechnology,
98 (1),
351-360.
*
Artículo
125 - Marcellin,E., Licona-Cassani,C., Mercer,T.R., Palfreyman,R.W., Nielsen,L.K.. Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach.
BMC Genomics,
14 (1).
*
Artículo
126 - Marcellin,E., Mercer,T.R., Licona-Cassani,C., Palfreyman,R.W., Dinger,M.E., Steen,J.A., Mattick,J.S., Nielsen,L.K.. Saccharopolyspora erythraea's genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch.
BMC Genomics,
14 (1).
*
Artículo
127 - Licona-Cassani,C., Marcellin,E., Quek,L.E., Jacob,S., Nielsen,L.K.. Reconstruction of the Saccharopolyspora erythraea genome-scale model and its use for enhancing erythromycin production.
Antonie Van Leeuwenhoek,
102 (3),
493-502.
*
Artículo
128 - Utrilla,J., Licona-Cassani,C., Marcellin,E., Gosset,G., Nielsen,L.K., Martinez,A.. Engineering and adaptive evolution of Escherichia coli for d-lactate fermentation reveals GatC as a xylose transporter.
Metabolic Engineering,
14 (5),
469-476.