Biól. Filiberto Sanchez Lopez
Técnico Académico
Estudios genómicos, bioquímicos de la interacción de la microbiota con distintos hospederos
Nivel B del PRIDE
Total de publicaciones: 22
- Tipo
- Fecha
Artículo
1 - Jatuyosporn,T., Laohawutthichai,P., Ochoa-Romo,J.P., Gallardo-Becerra,L., Sanchez-Lopez,F., Tassanakajon,A., Ochoa-Leyva,A., Krusong,K. (2023). White spot syndrome virus impact on the expression of immune genes and gut microbiome of black tiger shrimp Penaeus monodon.
Scientific Reports,
13 (1),
996.
Artículo
2 - Ochoa-Romo,J.P., Cornejo-Granados,F., Lopez-Zavala,A.A., Viana,M.T., Sanchez,F., Gallardo-Becerra,L., Luque-Villegas,M., Valdez-Lopez,Y., Sotelo-Mundo,R.R., Cota-Huizar,A., Lopez-Munguia,A., Ochoa-Leyva,A. (2022). Agavin induces beneficial microbes in the shrimp microbiota under farming conditions.
Scientific Reports,
12 (1),
6392.
Artículo
3 - Bikel,S., Lopez-Leal,G., Cornejo-Granados,F., Gallardo-Becerra,L., Garcia-Lopez,R., Sanchez,F., Equihua-Medina,E., Ochoa-Romo,J.P., Lopez-Contreras,B.E., Canizales-Quinteros,S., Hernandez-Reyna,A., Mendoza-Vargas,A., Ochoa-Leyva,A. (2021). Gut dsDNA virome shows diversity and richness alterations associated with childhood obesity and metabolic syndrome.
iScience,
24 (8),
102900.
Artículo
4 - Gomez-Fuentes,S., Hernandez-de la Fuente,S., Morales-Ruiz,V., Lopez-Recinos,D., Guevara-Salinas,A., Parada-Colin,M.C., Espitia,C., Ochoa-Leyva,A., Sanchez,F., Villalobos,N., Arce-Sillas,A., Hernandez,M., Mora,S.I., Fragoso,G., Sciutto,E., Adalid-Peralta,L. (2021). A novel, sequencing-free strategy for the functional characterization of Taenia solium proteomic fingerprint.
PLoS Neglected Tropical Diseases,
15 (2),
e0009104.
Artículo
5 - Valenzuela-Chavira,I., Corona-Martinez,D.O., Garcia-Orozco,K.D., Beltran-Torres,M., Sanchez-Lopez,F., Arvizu-Flores,A.A., Sugich-Miranda,R., Lopez-Zavala,A.A., Robles-Zepeda,R.E., Islas-Osuna,M.A., Ochoa-Leyva,A., Toney,M.D., Serrano-Posada,H., Sotelo-Mundo,R.R. (2021). A Novel Glutathione S-Transferase Gtt2 Class (VpGSTT2) Is Found in the Genome of the AHPND/EMS Vibrio parahaemolyticus Shrimp Pathogen.
Toxins,
13 (9),
664.
Artículo
6 - Garcia-Lopez,R., Cornejo-Granados,F., Lopez-Zavala,A.A., Sanchez-Lopez,F., Cota-Huizar,A., Sotelo-Mundo,R.R., Guerrero,A., Mendoza-Vargas,A., Gomez-Gil,B., Ochoa-Leyva,A. (2020). Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota.
Microorganisms,
8 (1).
Artículo
7 - Cervantes-Echeverria,M., Equihua-Medina,E., Cornejo-Granados,F., Hernandez-Reyna,A., Sanchez,F., Lopez-Contreras,B.E., Canizales-Quinteros,S., Ochoa-Leyva,A. (2018). Whole-genome of Mexican-crAssphage isolated from the human gut microbiome.
BMC Research Notes,
11 (1),
902.
Artículo
8 - Gonzalez-Felix, M.L., Gatlin, D.M., Urquidez-Bejarano, P., de la Ree-Rodriguez, C., Duarte-Rodriguez, L., Sanchez, F., Casas-Reyes, A., Yamamoto, F.Y., Ochoa-Leyva, A., Perez-Velazquez, M. (2018). Effects of commercial dietary prebiotic and probiotic supplements on growth, innate immune responses, and intestinal microbiota and histology of Totoaba macdonaldi.
Aquaculture,
491,
239-251.
Artículo
9 - Bikel, S., Jacobo-Albavera, L., Sanchez-Munoz, F., Cornejo-Granados, F., Canizales-Quinteros, S., Soberon, X., Sotelo-Mundo, R.R., Del Rio-Navarro, B.E., Mendoza-Vargas, A., Sanchez, F., Ochoa-Leyva, A. (2017). A novel approach for human whole transcriptome analysis based on absolute gene expression of microarray data.
PeerJ,
5,
e4133.
Artículo
10 - Bobes, R.J., Navarrete-Perea, J., Ochoa-Leyva, A., Anaya, V.H., Hernandez, M., Cervantes-Torres, J., Estrada, K., Sanchez-Lopez, F., Soberon, X., Rosas, G., Maroni-Nunes C., Garcia-Varela, M., Sotelo-Mundo, R.R., Lopez-Zavala, A.A., Gevorkian, G., Acero, G., Laclette, J.P., Fragoso, G., Sciutto, E. (2017). Experimental and theoretical approaches to investigate the immunogenicity of Taenia solium-derived KE7 antigen.
Infection and Immunity,
85,
e00395-17.
Artículo
11 - Cornejo-Granados, F., Zatarain-Barron, Z.L., Cantu-Robles, V.A., Mendoza-Vargas, A., Molina-Romero, C., Sanchez, F., Del Pozo-Yauner, L., Hernandez-Pando, R., Ochoa-Leyva, A. (2017). Secretome Prediction of Two M. tuberculosis Clinical Isolates Reveals Their High Antigenic Density and Potential Drug Targets.
Frontiers in Microbiology,
8,
128.
Artículo
12 - Cornejo-Granados, F., Lopez-Zavala, A.A., Gallardo-Becerra, L., Mendoza-Vargas, A., Sanchez, F., Vichido, R., Brieba, L.G., Viana, M.T., Sotelo-Mundo, R.R., Ochoa-Leyva, A. (2017). Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions.
Scientific Reports,
7 (1),
11783.
Artículo
13 - Lopez-de Los Santos Y., Chan,H., Cantu,V.A., Rettner,R., Sanchez,F., Zhang,Z., Saier,M.H., Soberon,X. (2012). Genetic engineering of the phosphocarrier protein NPr of the Escherichia coli phosphotransferase system selectively improves sugar uptake activity.
Journal of Biological Chemistry,
287 (35),
29931-29939.
Artículo
14 - Ochoa-Leyva,A., Barona-Gomez,F., Saab-Rincon,G., Verdel-Aranda,K., Sanchez,F., Soberon,X. (2011). Exploring the Structure-Function Loop Adaptability of a (beta/alpha)(8)-Barrel Enzyme through Loop Swapping and Hinge Variability.
Journal of Molecular Biology,
411 (1),
143-157.
Artículo
15 - Ochoa-Leyva,A., Soberon,X., Sanchez,F., Arguello,M., Montero-Moran,G., Saab-Rincon,G. (2009). Protein design through systematic catalytic loop exchange (SCLE) in the (beta/alpha)(8)-fold.
Journal of Molecular Biology,
387 (4),
949-964.
Artículo
16 - Saab-Rincon,G., Mancera,E., Montero-Moran,G., Sanchez,F., Soberon,X. (2005). Generation of variability by in vivo recombination of halves of a (beta/alpha)(8) barrel protein.
Biomolecular Engineering,
22 (4),
113-120.
Artículo
17 - Gaytan,P., Yanez,J., Sanchez,F., Soberon,X. (2001). Orthogonal combinatorial mutagenesis: a codon-level combinatorial mutagenesis method useful for low multiplicity and amino acid-scanning protocols.
Nucleic Acids Research,
29 (3),
E9.
Artículo
18 - Saab-Rincon,G., Juarez,V.R., Osuna,J., Sanchez,F., Soberon,X. (2001). Different strategies to recover the activity of monomeric triosephosphate isomerase by directed evolution.
Protein Engineering,
14 (3),
149-155.
Artículo
19 - Gaytan,P., Yanez,J., Sanchez,F., Mackie,H., Soberon,X. (1998). Combination of DMT-mononucleotide and Fmoc-trinucleotide phosphoramidites in oligonucleotide synthesis affords an automatable codon-level mutagenesis method.
Chemistry and Biology,
5 (9),
519-527.
Artículo
Preprint
21 - Cervantes-Echeverria,M.J., Jimenez-Rico,M.A., Manzo,R., Hernandez-Reyna,A., Cornejo-Granados,F., Sanchez-Lopez,F., Salazar-Leon,J., Pedraza-Alva,G., Perez-Martinez,L., Ochoa-Leyva,A. (2024). Fecal Virome Transplantation (FVT) from healthy humans remodels the gut bacteriome and virome and reduces metabolic syndrome in mice.
bioRxiv,
Preprint posted February 18.
Preprint
22 - Bikel,S., Lopez-Leal,G., Cornejo-Granados,F., Gallardo-Becerra,L., Sanchez,F., Equihua-Medina,E., Ochoa-Romo,J.P., Lopez-Contreras,B.E., Canizales-Quinteros,S., Ochoa-Leyva,A. (2020). Gut Phageome Analysis Reveals Disease-Specific Hallmarks in Childhood Obesity.
bioRxiv,
Preprint posted July 30.
Preprint
23 - Cervantes-Echeverria,M.J., Jimenez-Rico,M.A., Manzo,R., Hernandez-Reyna,A., Cornejo-Granados,F., Sanchez-Lopez,F., Salazar-Leon,J., Pedraza-Alva,G., Perez-Martinez,L., Ochoa-Leyva,A.. Fecal Virome Transplantation (FVT) from healthy humans remodels the gut bacteriome and virome and reduces metabolic syndrome in mice.
bioRxiv,
Preprint posted February 18.
Artículo
24 - Jatuyosporn,T., Laohawutthichai,P., Ochoa-Romo,J.P., Gallardo-Becerra,L., Sanchez-Lopez,F., Tassanakajon,A., Ochoa-Leyva,A., Krusong,K.. White spot syndrome virus impact on the expression of immune genes and gut microbiome of black tiger shrimp Penaeus monodon.
Scientific Reports,
13 (1),
996.
Artículo
25 - Ochoa-Romo,J.P., Cornejo-Granados,F., Lopez-Zavala,A.A., Viana,M.T., Sanchez,F., Gallardo-Becerra,L., Luque-Villegas,M., Valdez-Lopez,Y., Sotelo-Mundo,R.R., Cota-Huizar,A., Lopez-Munguia,A., Ochoa-Leyva,A.. Agavin induces beneficial microbes in the shrimp microbiota under farming conditions.
Scientific Reports,
12 (1),
6392.
Artículo
26 - Bikel,S., Lopez-Leal,G., Cornejo-Granados,F., Gallardo-Becerra,L., Garcia-Lopez,R., Sanchez,F., Equihua-Medina,E., Ochoa-Romo,J.P., Lopez-Contreras,B.E., Canizales-Quinteros,S., Hernandez-Reyna,A., Mendoza-Vargas,A., Ochoa-Leyva,A.. Gut dsDNA virome shows diversity and richness alterations associated with childhood obesity and metabolic syndrome.
iScience,
24 (8),
102900.
Artículo
27 - Gomez-Fuentes,S., Hernandez-de la Fuente,S., Morales-Ruiz,V., Lopez-Recinos,D., Guevara-Salinas,A., Parada-Colin,M.C., Espitia,C., Ochoa-Leyva,A., Sanchez,F., Villalobos,N., Arce-Sillas,A., Hernandez,M., Mora,S.I., Fragoso,G., Sciutto,E., Adalid-Peralta,L.. A novel, sequencing-free strategy for the functional characterization of Taenia solium proteomic fingerprint.
PLoS Neglected Tropical Diseases,
15 (2),
e0009104.
Artículo
28 - Valenzuela-Chavira,I., Corona-Martinez,D.O., Garcia-Orozco,K.D., Beltran-Torres,M., Sanchez-Lopez,F., Arvizu-Flores,A.A., Sugich-Miranda,R., Lopez-Zavala,A.A., Robles-Zepeda,R.E., Islas-Osuna,M.A., Ochoa-Leyva,A., Toney,M.D., Serrano-Posada,H., Sotelo-Mundo,R.R.. A Novel Glutathione S-Transferase Gtt2 Class (VpGSTT2) Is Found in the Genome of the AHPND/EMS Vibrio parahaemolyticus Shrimp Pathogen.
Toxins,
13 (9),
664.
Artículo
29 - Garcia-Lopez,R., Cornejo-Granados,F., Lopez-Zavala,A.A., Sanchez-Lopez,F., Cota-Huizar,A., Sotelo-Mundo,R.R., Guerrero,A., Mendoza-Vargas,A., Gomez-Gil,B., Ochoa-Leyva,A.. Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota.
Microorganisms,
8 (1).
Preprint
30 - Bikel,S., Lopez-Leal,G., Cornejo-Granados,F., Gallardo-Becerra,L., Sanchez,F., Equihua-Medina,E., Ochoa-Romo,J.P., Lopez-Contreras,B.E., Canizales-Quinteros,S., Ochoa-Leyva,A.. Gut Phageome Analysis Reveals Disease-Specific Hallmarks in Childhood Obesity.
bioRxiv,
Preprint posted July 30.
Artículo
31 - Cervantes-Echeverria,M., Equihua-Medina,E., Cornejo-Granados,F., Hernandez-Reyna,A., Sanchez,F., Lopez-Contreras,B.E., Canizales-Quinteros,S., Ochoa-Leyva,A.. Whole-genome of Mexican-crAssphage isolated from the human gut microbiome.
BMC Research Notes,
11 (1),
902.
Artículo
32 - Gonzalez-Felix, M.L., Gatlin, D.M., Urquidez-Bejarano, P., de la Ree-Rodriguez, C., Duarte-Rodriguez, L., Sanchez, F., Casas-Reyes, A., Yamamoto, F.Y., Ochoa-Leyva, A., Perez-Velazquez, M.. Effects of commercial dietary prebiotic and probiotic supplements on growth, innate immune responses, and intestinal microbiota and histology of Totoaba macdonaldi.
Aquaculture,
491,
239-251.
Artículo
33 - Bikel, S., Jacobo-Albavera, L., Sanchez-Munoz, F., Cornejo-Granados, F., Canizales-Quinteros, S., Soberon, X., Sotelo-Mundo, R.R., Del Rio-Navarro, B.E., Mendoza-Vargas, A., Sanchez, F., Ochoa-Leyva, A.. A novel approach for human whole transcriptome analysis based on absolute gene expression of microarray data.
PeerJ,
5,
e4133.
Artículo
34 - Bobes, R.J., Navarrete-Perea, J., Ochoa-Leyva, A., Anaya, V.H., Hernandez, M., Cervantes-Torres, J., Estrada, K., Sanchez-Lopez, F., Soberon, X., Rosas, G., Maroni-Nunes C., Garcia-Varela, M., Sotelo-Mundo, R.R., Lopez-Zavala, A.A., Gevorkian, G., Acero, G., Laclette, J.P., Fragoso, G., Sciutto, E.. Experimental and theoretical approaches to investigate the immunogenicity of Taenia solium-derived KE7 antigen.
Infection and Immunity,
85,
e00395-17.
Artículo
35 - Cornejo-Granados, F., Zatarain-Barron, Z.L., Cantu-Robles, V.A., Mendoza-Vargas, A., Molina-Romero, C., Sanchez, F., Del Pozo-Yauner, L., Hernandez-Pando, R., Ochoa-Leyva, A.. Secretome Prediction of Two M. tuberculosis Clinical Isolates Reveals Their High Antigenic Density and Potential Drug Targets.
Frontiers in Microbiology,
8,
128.
Artículo
36 - Cornejo-Granados, F., Lopez-Zavala, A.A., Gallardo-Becerra, L., Mendoza-Vargas, A., Sanchez, F., Vichido, R., Brieba, L.G., Viana, M.T., Sotelo-Mundo, R.R., Ochoa-Leyva, A.. Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions.
Scientific Reports,
7 (1),
11783.
Artículo
37 - Lopez-de Los Santos Y., Chan,H., Cantu,V.A., Rettner,R., Sanchez,F., Zhang,Z., Saier,M.H., Soberon,X.. Genetic engineering of the phosphocarrier protein NPr of the Escherichia coli phosphotransferase system selectively improves sugar uptake activity.
Journal of Biological Chemistry,
287 (35),
29931-29939.
Artículo
38 - Ochoa-Leyva,A., Barona-Gomez,F., Saab-Rincon,G., Verdel-Aranda,K., Sanchez,F., Soberon,X.. Exploring the Structure-Function Loop Adaptability of a (beta/alpha)(8)-Barrel Enzyme through Loop Swapping and Hinge Variability.
Journal of Molecular Biology,
411 (1),
143-157.
Artículo
39 - Ochoa-Leyva,A., Soberon,X., Sanchez,F., Arguello,M., Montero-Moran,G., Saab-Rincon,G.. Protein design through systematic catalytic loop exchange (SCLE) in the (beta/alpha)(8)-fold.
Journal of Molecular Biology,
387 (4),
949-964.
Artículo
40 - Saab-Rincon,G., Mancera,E., Montero-Moran,G., Sanchez,F., Soberon,X.. Generation of variability by in vivo recombination of halves of a (beta/alpha)(8) barrel protein.
Biomolecular Engineering,
22 (4),
113-120.
Artículo
41 - Gaytan,P., Yanez,J., Sanchez,F., Soberon,X.. Orthogonal combinatorial mutagenesis: a codon-level combinatorial mutagenesis method useful for low multiplicity and amino acid-scanning protocols.
Nucleic Acids Research,
29 (3),
E9.
Artículo
42 - Saab-Rincon,G., Juarez,V.R., Osuna,J., Sanchez,F., Soberon,X.. Different strategies to recover the activity of monomeric triosephosphate isomerase by directed evolution.
Protein Engineering,
14 (3),
149-155.
Artículo
43 - Gaytan,P., Yanez,J., Sanchez,F., Mackie,H., Soberon,X.. Combination of DMT-mononucleotide and Fmoc-trinucleotide phosphoramidites in oligonucleotide synthesis affords an automatable codon-level mutagenesis method.
Chemistry and Biology,
5 (9),
519-527.
Artículo