IBT-UNAM : Dr. Gabriel Isaac Corkidi Blanco
Dr. Gabriel Isaac Corkidi Blanco Grupo
Ingeniería Celular y Biocatálisis
Líneas de investigación
email: corkidi @ibt.unam.mx
Teléfonos
Oficina +52 (777) 329-1845 red UNAM 27845 Laboratorio +52 (777) 329-1710 red UNAM 27710 +52 (777) 311-4900 ext 313
- Licenciatura: Ingeniero Electronico y Comunicaciones, Universidad Iberoamericana (1980)
Premio Imaging Solutions of the Year, en el área de Microscopía Revista Industrial Advanced Imaging (2008) Mención Honorífica en el área de Investigación Tecnológica en el Premio CANIFARMA CANIFARMA (2007) Premio Image-Pro In Action 3er lugar Media Cybernetics (2004) Premio Image-Pro In Action Media Cybernetics (2002)
Estudiantes Javier Andrés Bribiesca "Análisis 3D de flujos dentro de una gota de agua"
Haydee Olinca Hernandez
Hanna Paola Ehrlich
Publicaciones recientes
Torres-Martinez,H.H. Hernandez-Herrera,P. Corkidi,G. Dubrovsky,J.G.
2020. From one cell to many: Morphogenetic field of lateral root founder cells in Arabidopsis thaliana is built by gradual recruitment Proceedings of the National Academy of Sciences of the United States of America, 117, 20943-20949.
Gadelha,H. Hernandez-Herrera,P. Montoya,F. Darszon,A. Corkidi,G.
2020. Human sperm uses asymmetric and anisotropic flagellar controls to regulate swimming symmetry and cell steering Science Advances, 6, eaba5168.
Holguin-Salas,A. Corkidi,G. Galindo,E.
2020. Local bubble size distribution in a pilot scale stirred tank containing a mycelial (three phases) dispersion as a function of constant retrofitted gassed power input Biochemical Engineering Journal, 159, 107614.
Bribiesca,A. Montoya,F. Hernandez,P. Ramos,E. Corkidi,G.
2020. Device for experimental characterization of the 4D flow inside an evaporating sessile water droplet Review of Scientific Instruments, 91, 016101.
Sanchez-Cardenas,C. Montoya,F. Navarrete,F.A. Hernandez-Cruz,A. Corkidi,G. Visconti,P.E. Darszon,A.
2018. Intracellular Ca2+ threshold reversibly switches flagellar beat off and on Biology of Reproduction, 99, 1010-1021.
Hernandez-Herrera,P. Montoya,F. Rendon-Mancha,J.M. Darszon,A. Corkidi,G.
2018. 3D+t Human Sperm Flagellum Tracing in low SNR Fluorescence Images IEEE Transactions on Medical Imaging, 37, 2236-2247.
Corkidi,G. Montoya,F. Hernandez-Herrera,P. Rios-Herrera,W.A. Muller,M.F. Trevino,C.L. Darszon,A.
2017. Are there intracellular Ca2+ oscillations correlated with flagellar beating in human sperm? A three vs. two-dimensional analysis Molecular Human Reproduction, 23, 583-593.
Ponce,G. Corkidi,G. Eapen,D. Lledias,F. Cardenas,L. Cassab,G.
2017. Root hydrotropism and thigmotropism in Arabidopsis thaliana are differentially controlled by redox status Plant Signaling and Behavior, 12, e1305536.
Brito-Bazan,M. Cuervo-Amaya,D.H. Corkidi,G. Galindo,E.
2017. Air and oil dispersions in a four-phase fermentation model, studied under varying physicochemical conditions and retrofitted constant gassed power input Chemical Engineering Research and Design, 120, 316-324.
Pacheco-Escobedo,M.A. Ivanov,V.B. Ransom-Rodriguez,I. Arriaga-Mejia,G. Avila,H. Baklanov,I.A. Pimentel,A. Corkidi,G. Doerner,P. Dubrovsky,J.G. Alvarez-Buylla,E.R. Garay-Arroyo,A.
2016. Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm Annals of Botany, 118, 763-776 [correction in: vol 119(3):487].
Corkidi,G. Montoya,F. Hernandez-Cruz,G. Vargas,M. Luviano-Ortiz,J.L. Ramos,E.
2016. Evaporation dynamics and sedimentation pattern of a sessile particle laden water droplet Experiments in Fluids, 57, .
Montiel-Martinez,A. Ciros-Perez,J. Corkidi,G.
2015. Littoral zooplankton-water hyacinth interactions: habitat or refuge? Hydrobiologia, 755, 173-182.
Rojas-Dominguez,A. Holguin-Salas,A. Galindo,E. Corkidi,G.
2015. Gradient-Direction-Pattern Transform for Automated Measurement of Oil Drops in Images of Multiphase Dispersions Chemical Engineering & Technology, 38, 327-335.
Holguin-Salas,A. Lopez-Lopez,D. Corkidi,G. Galindo,E.
2015. Foam production and hydrodynamic performance of a traditional Mexican molinillo (beater) in the chocolate beverage preparation process Food and Bioproducts Processing, 93, 139-147.
Wucherpfennig,T. Schulz,A. Pimentel,J.A. Corkidi,G. Sieblitz,D. Pump,M. Gorr,G. Schutte,K. Wittmann,C. Krull,R.
2014. Viability characterization of Taxus chinensis plant cell suspension cultures by rapid colorimetric- and image analysis-based techniques Bioprocess and Biosystems Engineering, 37, 1799-1808.
Corkidi,G. Rojas,A. Pimentel,A. Galindo,E.
2012. Visualization of compound drops formation in multiphase processes for the identification of factors influencing bubble and water droplet inclusions in oil drops Chemical Engineering Research & Design, 90, 1727-1738.
Pimentel,J.A. Carneiro,J. Darszon,A. Corkidi,G.
2012. A segmentation algorithm for automated tracking of fast swimming unlabelled cells in three dimensions Journal of Microscopy, 245, 72-81.
Guerrero,A. Carneiro,J. Pimentel,A. Wood,C.D. Corkidi,G. Darszon,A.
2011. Strategies for locating the female gamete: the importance of measuring sperm trajectories in three spatial dimensions Molecular Human Reproduction, 17, 511-523.
Corkidi,G. Hernandez-Cruz,G. Ramos,E. Ascanio,G.
2009. Visualization of pseudocaverns in stirred vessels Journal of Engineering Science and Technology, 4, 344-350.
Uribe,R.M. Zacarias,M. Corkidi,G. Cisneros,M. Charli,J.L. Joseph-Bravo,P.
2009. 17beta-oestradiol indirectly inhibits trh expression in the hypothalamic paraventricular nucleus of female rats and blunts thyroid axis response to cold exposure Journal of Neuroendocrinology, 21, 439-448.
Corkidi,G. Serrano-Carreon,L. Galindo,E.
2008. Análisis digital de imágenes para la caracterización microscópica de parámetros críticos en la producción fermentativa de metabolitos secundarios Revista Colombiana de Biotecnología, 10, 75-93.
Guevara-Lopez,E. Sanjuan-Galindo,R. Cordova-Aguilar,M.S. Corkidi,G. Ascanio,G. Galindo,E.
2008. High-speed visualization of multiphase dispersions in a mixing tank Chemical Engineering Research & Design, 86, 1382-1387.
Cordova-Aguilar,M.S. Diaz-Uribe,R. Escobar,O. Corkidi,G. Galindo,E.
2008. An optical approach for identifying the nature and the relative 3D spatial position of components of complex structures formed in multiphase dispersion systems Chemical Engineering Science, 63, 3047-3056.
Corkidi,G. Taboada,B. Wood,C.D. Guerrero,A. Darszon,A.
2008. Tracking sperm in three-dimensions Biochemical and Biophysical Research Communications, 373, 125-129.
Corkidi,G. Voinson,T. Taboada,B.I. Cordova,M.S. Galindo,E.
2008. Accurate determination of embedded particles within dispersed elements in multiphase dispersions, using a 3D micro-stereoscopic vision system Chemical Engineering Science, 63, 317-329.
Vega-Alvarado,L. Elezgaray,I. Hemar,A. Menard,M. Ranger,C. Corkidi,G.
2007. A comparison of image deconvolution algorithms applied to the detection of endocytic vesicles in fluorescence images of neural proteins Conf Proc IEEE Eng Med Biol Soc, 1, 755-758 * .
Taboada,B. Vega-Alvarado,L. Cordova-Aguilar,M. Galindo,E. Corkidi,G.
2006. Semi-automatic image analysis methodology for the segmentation of bubbles and drops in complex dispersions occurring in bioreactors Experiments in Fluids, 41, 383-392.
Corkidi,G. Balderas-Ruiz,K.A. Taboada,B. Serrano-Carreon,L. Galindo,E.
2006. Assessing mango anthracnose using a new three-dimensional image-analysis technique to quantify lesions on fruit Plant Pathology, 55, 250-257.
Rocha-Valadez,J.A. Hassan,M. Corkidi,G. Flores,C. Galindo,E. Serrano-Carreon,L.
2005. 6-pentyl-alpha-pyrone production by Trichoderma harzianum: The influence of energy dissipation rate and its implications on fungal physiology Biotechnology and Bioengineering, 91, 54-61.
Galindo,E. Larralde-Corona,C.P. Brito,T. Cordova-Aguilar,M.S. Taboada,B. Vega-Alvarado,L. Corkidi,G.
2005. Development of advanced image analysis techniques for the in situ characterization of multiphase dispersions occurring in bioreactors Journal of Biotechnology, 116, 261-270.
Vega-Alvarado,L. Cordova,M.S. Taboada,B. Galindo,E. Corkidi,G.
2004. Online Sauter Diameter Measurement of Air Bubbles and Oil Drops in Stirred Bioreactors by Using Hough Transform Lecture Notes in Computer Science, 3212, 834-840.
Galindo,E. Flores,C. Larralde-Corona,P. Corkidi-Blanco,G. Rocha-Valadez,J.A. Serrano-Carreon,L.
2004. Production of 6-pentyl--pyrone by Trichoderma harzianum cultured in unbaffled and baffled shake flasks, Biochemical Engineering Journal, 18, 1-8.
Lucatero,S. Larralde-Corona,C.P. Corkidi,G. Galindo,E.
2003. Oil and Air Dispersion in a Simulated Fermentation Broth as a Function of Mycelial Morphology Biotechnology Progress, 19, 285-292.
Eapen,D. Barroso,M.L. Campos,M.E. Ponce,G. Corkidi,G. Dubrovsky,J.G. Cassab,G.I.
2003. A no hydrotropic response Root Mutant that Responds Positively to Gravitropism in Arabidopsis Plant Physiology, 131, 536-546.
Hassan,M. Corkidi,G. Galindo,E. Flores,C. Serrano-Carreon,L.
2002. Accurate and rapid viability assessment of Trichoderma harzianum using fluorescence-based digital image analysis Biotechnology and Bioengineering, 80, 677-684.
Vega-Alvarado,L. Marquez,J. Corkidi,G.
2002. Inter-chromosome texture as a feature for automatic identification of metaphase spreads Medical & Biological Engineering & Computing, 40, 479-484.
Pena,C. Reyes,C. Larralde-Corona,P. Corkidi,G. Galindo,E.
2002. Characterization of Azotobacter vinelandii aggregation in submerged culture by digital image analysis Fems Microbiology Letters, 207, 173-177.
Sanchez,E. Uribe,R.M. Corkidi,G. Zoeller,R.T. Cisneros,M. Zacarias,M. Morales-Chapa,C. Charli,J.L. Joseph-Bravo,P.
2001. Differential Responses of Thyrotropin-Releasing Hormone (TRH) Neurons to Cold Exposure or Suckling Indicate Functional Heterogeneity of the TRH System in the Paraventricular Nucleus of the Rat Hypothalamus Neuroendocrinology, 74, 407-422.
Arambula-Cosio F. Vega,L. Herrera-Becerra A. Prieto-Melendez C. Corkidi,G.
2001. Automatic identification of metaphase spreads and nuclei using neural networks Medical & Biological Engineering & Computing, 39, 391-396.
Poggio,S. Osorio,A. Corkidi,G. Dreyfus,G. Camarena,L.
2001. The N terminus of FliM is essential to promote flagellar rotation in Rhodobacter sphaeroides Journal of Bacteriology, 183, 3142-3148.
Guerrero,C.A. Zarate,S. Corkidi,G. Lopez,S. Arias,C.F.
2000. Biochemical characterization of rotavirus receptors in MA104 cells Journal of Virology, 74, 9362-9371.
Corkidi,G. Diaz-Uribe,R. Folch-Mallol,J.L. Nieto-Sotelo,J.
1998. COVASIAM: an image analysis method that allows detection of confluent microbial colonies and colonies of various sizes for automated counting Applied and Environmental Microbiology, 64, 1400-1404.
Corkidi,G. Vega,L. Marquez,J. Rojas,E. Ostrosky-Wegman,P.
1998. Roughness feature of metaphase chromosome spreads and nuclei for automated cell proliferation analysis Medical & Biological Engineering & Computing, 36, 679-685 [erratum vol 37 p 543] * .
Carbo,R. Zetina,M.E. Corkidi,G. Morales,M.A.
1997. 3.0.CO;2-8> Topographic relationship of neurotensin-containing axon terminals with cardiac and noncardiac principal ganglion cells in the stellate ganglia of the cat Synapse, 25, 277-284 * .
Sanchez,E. Charli,J.L. Morales,C. Corkidi,G. Seidah,N.G. Joseph-Bravo,P. Uribe,R.M.
1997. Expression of the proprotein convertases PC1 and PC2 mRNAs in thyrotropin releasing hormone neurons of the rat paraventricular nucleus of hypothalamus Brain Research, 761, 77-86.
Corkidi,G. Ruiz-Velasco,S. Ortiz,A. Vargas,G. Teixeira,F.
1997. Limits of variation of fiber distribution in the sural nerve of man Archives of Medical Research, 28, 183-187 * .
Talavera,E. Martinez-Lorenzana,G. Corkidi,G. Leon-Olea,M. Condes-Lara,M.
1997. NADPH-diaphorase-stained neurons after experimental epilepsy in rats Nitric Oxide, 1, 484-493 * .
Lopez-Velazquez,G. Marquez,J. Ubaldo,E. Corkidi,G. Echeverria,O. Vazquez-Nin,G.H.
1996. Three-dimensional analysis of the arrangement of compact chromatin in the nucleus of G0 rat lymphocytes Histochemistry and Cell Biology, 105, 153-161 * .
Verdugo-Diaz,L. Mendez,M. Corkidi,G. Drucker-Colin,R.
1995. Phenotypic changes induced by replating of early post-natal rat chromaffin cells Neuroscience Letters, 183, 167-170.
Corkidi,G. Marquez,J. Garcia-Ruiz,M. Diaz-Cintra,S. Graue,E.
1994. Cartographic system for spatial distribution analysis of corneal endothelial cells Medical & Biological Engineering & Computing, 32, 421-426 * .
Diaz-Cintra,S. Garcia-Ruiz,M. Corkidi,G. Cintra,L.
1994. Effects of prenatal malnutrition and postnatal nutritional rehabilitation on CA3 hippocampal pyramidal cells in rats of four ages Brain Research, 662, 117-126 * .
Drucker-Colin,R. Verdugo-Diaz,L. Mendez,M. Carrillo-Ruiz,J. Morgado-Valle,C. Hernandez-Cruz,A. Corkidi,G.
1994. Comparison between low frequency magnetic field stimulation and nerve growth factor treatment of cultured chromaffin cells, on neurite growth, noradrenaline release, excitable properties, and grafting in nigrostriatal lesioned rats Molecular and Cellular Neuroscience, 5, 485-498 * .
Sapiro,R. Corkidi,G. Dominguez,R.
1994. Blockade of the cholinergic system during the female's rat infantile period stimulates follicular growth but not stimulatory feedback of oestrogen.Medical Science Research, 22, 131-132 * .
Corkidi,G. Marquez,J. Usisima,R. Toledo,R. Valdez,J. Graue,E.
1993. Automated in vivo and online morphometry of human corneal endothelium Medical & Biological Engineering & Computing, 31, 432-437 Correction 32 (1) 84 * .
Garcia-Ruiz,M. Diaz-Cintra,S. Cintra,L. Corkidi,G.
1993. Effect of protein malnutrition on CA3 hippocampal pyramidal cells in rats of three ages Brain Research, 625, 203-212 * .
Flores,R. Ortiz,L. Moreno,M. Corkidi,G. Solar,A. Briseno,M.
1984. OPTO-ELECTRONIC SYSTEM FOR AUTOMATIC TRACK COUNTING IN PLASTIC SSNTD Nuclear Tracks And Radiation Measurements, 8, 211-214 * .
Flores,R. Ortiz,L. Moreno,M. Corkidi,G. Solar,A. Balcazar-Garcia,M.
1983. OPTO-ELECTRONIC SYSTEM FOR AUTOMATIC TRACK COUNTING IN PLASTIC SSNTD Nuclear Instruments & Methods In Physics Research, 212, 375-381 * .
Libros y capítulos recientes Bribiesca,J. Montoya,F. Hernandez,P. Ramos,E. Corkidi,G. 2019. Metodología para el análisis 3D de la evaporación y sedimentación de una gota de agua en: SOMI XXXIV Congreso de Instrumentación Morelia, Michoacán, México, 16 al 18 de octubre de 2019.
Bribiesca-Sanchez,J.A. Montoya,F. Hernandez,P. Ramos,E. Corkidi,G. 2018. Sistema de microscopía tridimensional para muestreo rápido y Time Lapse simultáneamente en: SOMI XXXIII Congreso de Instrumentación, Torreón, Coahuila, México, del 29 al 31 de Octubre de 2018..
Bribiesca,J. Montoya,J. Hernandez,P. Ramos-Mora,E. Corkidi,G. 2017. Instrumentación y Algoritmos para el Análisis de la Dinámica Tridimensional de Evaporación de Gotas Sésiles de Agua en: SOMI XXXII Congreso de Instrumentación Acapulco, Gro, Mexico 25 al 27 de octubre 2017. pags. 1-7
Ehrlich,H. Montoya,F. Hernandez,P. Darszon,A. Corkidi,G. 2017. Análisis de Métricas Sobre el Flagelo de Espermatozoides de Humano en 3D para su Clasificación entre Activados e Hiperactivados en: Memorias del XL Congreso Nacional de Ingenieria Biomedica CNIB 2017. pags. 182-185
Hernandez-Herrera,P. Montoya,F. Rendon,J.M. Darszon,A. Corkidi,G. 2017. Sperm Flagellum Center-Line Tracing in Fluorescence 3D+t Low SNR Stacks Using an Iterative Minimal Path Method en: Cheriet,F. Image Analysis and Recognition: 14th International Conference, ICIAR 2017, Montreal, QC, Canada, July 5-7, 2017, Proceedings. Cham. Springer International Publishing. pags. 437-445
Serrano-Carreon,L. Galindo,E. Rocha-Valadez,J.A. Holguin-Salas,A. Corkidi,G. 2015. Hydrodynamics, Fungal Physiology, and Morphology en: Bley,T. Filaments in Bioprocesses. pags. 55-90
Silva-Villalobos,F. Pimentel,J.A. Darszon,A. Corkidi,G. 2014. Imaging of the 3D dynamics of flagellar beating in human sperm en: Engineering in Medicine and Biology Society (EMBC), 2014 36th Annual International Conference of the IEEE. pags. 190-193
Rojas-Dominguez,A. Corkidi,G. 2011. Automated recognition of oil drops in images of multiphase dispersions via gradient direction pattern en: Image and Signal Processing (CISP), 2011 4th International Congress on. IEEE. pags. 1209-1213
Pimentel,J.A. Corkidi,G. 2010. Three dimensional template matching segmentation method for motile cells in 3D+t video sequences en: Conf Proc IEEE Eng Med Biol Soc. IEEE. pags. 4777-4780
Pimentel,A. Corkidi,G. 2009. Mechanical vibration compensation method for 3D+t multi-particle tracking in microscopic volumes en: Conf Proc IEEE Eng Med Biol Soc. IEEE. pags. 1429-1432
Rojas-Dominguez,A. Corkidi,G. 2009. Toward automated detection of oil drops in images of multiphase dispersions en: Smith,N.B. Proceeding (654) Signal and Image Processing. Acta Press.
Corkidi,G. Taboada,B. Wood,C.D. Guerrero,A. Darszon,A. 2008. Three-dimensional image acquisition system for multi-sperm tracking en: Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on. IEEE. pags. 145-148
Corkidi-Blanco,G. 2008. Viaje al interior de un biorreactor, imágenes y análisis en: *agustin Una ventana al quehacer científico. Instituto de Biotecnología de la UNAM 25 aniversario, cap 11. Mexico, D.F.. UNAM. pags. 119-130
Briere,J.B. Cordova,M.S. Galindo,E. Corkidi,G. 2005. Micro-stereoscopic vision system for the determination of air bubbles and aqueous droplets density within oil drops in simulated processes en: Proceedings of the 5th International Conference 3-D Digital Imaging and Modelling. Ottawa. pags. 499-505
Vega-Alvarado,L. Taboada,B. Galindo,E. Corkidi,G. 2003. Hough transform based method for air bubbles and oil drops segmentation in dispersions ocurring in stirred bioreactors en: Annual International Conference of the IEEE Engineering in Medicine and Biology. pags. 735-738
Taboada,B. Poggio,S. Camarena,L. Corkidi,G. 2003. Automatic tracking and analysis system for free-swimming bacteria en: Annual International Conference of the IEEE Engineering in Medicine and Biology. pags. 906-909
Corkidi-Blanco,G. Trejo,M. Nieto-Sotelo,J. 2003. Automated microbial colony counting using image processing techniques en: Olson,W.P. Rapid analytical microbiology: the chemistry and physics of microbial indentification. pags. 263-282
Vega-Alvarado,L. Marquez,J. Corkidi,G. 2001. Automatic metaphase finding by inter-chromosome extrema profile analysis en: Annual Reports of the Research Reactor Institute, Kyoto University. pags. 2560-2562
Otras Publicaciones Corkidi,G. Hernandez-Herrera,P. Montoya,F. Gadelha,H. Darszon,A.
2020. Computer-assisted segmentation-free analysis for long-term assessment of flagellar beating in free swimming human spermatozoa: the role of emptying calcium stores bioRxiv, Preprint posted July 15, 2020.
Gadelha,H. Hernandez-Herrera,P. Montoya,F. Darszon,A. Corkidi,G.
2019. The human sperm beats anisotropically and asymmetrically in 3D bioRxiv, Preprint posted October 05, 2019, 795245.
Corkidi-Blanco,G. Darszon-Israel,A.
2019. El flagelo del espermatozoide humano en tres dimensiones Biotecnología en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 16, 3-5.
Holguin-Salas,A. Corkidi-Blanco,G. Galindo-Fentanes,E.
2017. La ciencia detrás de la receta de la abuela para preparar chocolate espumoso usando un molinillo Biotecnología en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 10, 3-5.
Galindo,E. Corkidi,G. Holguin-Salas,A. Lopez-Lopez,D.
2014. Producción de espuma en el chocolate con el molinillo tradicional Revista Digital Universitaria, 15, art 37.
Corkidi-Blanco,G. Rojas-Dominguez,A. Balderas-Ruiz,K.A. Sangabriel-Mendoza,J.C. Serrano-Carreon,L. Galindo-Fentanes,E.
2010. Una nueva herramienta para la caracterización precisa y cuantitativa de la Antracnosis del Mango, de utilidad para fitopatólogos, productores y exportadores Claridades Agropecuarias, 198, 39-47.
Taboada,B. Larralde,P. Brito,T. Vega-Alvarado,L. Diaz,R. Galindo,E. Corkidi,G.
2003. Images acquisition of multiphase dispersion in fermentation processes Journal of Applied Research and Technology, 1, 78-84.
Granados,L. Cintra,L. Aguilar,A. Corkidi,G. Kemper,T. Morgane,P. Diaz-Cintra,S.
1995. Mossy fibers of the hippocampal formation in prenatal malnourished rats.Boletin de estudios medicos y biologicos, 43, 3-11 * .
Patentes G. Corkidi-Blanco y J. Nieto-Sotelo 1999 COVASIAM, An Image Analysis Method that allows Detection of Confluent Microbial Colonies and Colonies of Various Sizes for Automated Counting.UNAM Estados Unidos.
* Indica publicación con otra institución de adscripción
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